Protein–RNA interactions for Protein: A0A0J9YWV2

TRBV4-1, T-cell receptor beta variable 4-1 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV4-1A0A0J9YWV2 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 AC133561.4-201ENST00000566112 224 ntBASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
TRBV4-1A0A0J9YWV2 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRBV4-1A0A0J9YWV2 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
TRBV4-1A0A0J9YWV2 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 BX842568.3-201ENST00000418104 571 ntBASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.19■□□□□ 0.66
TRBV4-1A0A0J9YWV2 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 MIR4767-201ENST00000582827 78 ntBASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
TRBV4-1A0A0J9YWV2 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms