Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
NUCKS1Q9H1E3 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC28.89■■■□□ 2.21
NUCKS1Q9H1E3 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC28.88■■■□□ 2.21
NUCKS1Q9H1E3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
NUCKS1Q9H1E3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
NUCKS1Q9H1E3 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
NUCKS1Q9H1E3 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC28.84■■■□□ 2.21
NUCKS1Q9H1E3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.84■■■□□ 2.21
NUCKS1Q9H1E3 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
NUCKS1Q9H1E3 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC28.83■■■□□ 2.21
NUCKS1Q9H1E3 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC28.83■■■□□ 2.21
NUCKS1Q9H1E3 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
NUCKS1Q9H1E3 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
NUCKS1Q9H1E3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NUCKS1Q9H1E3 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
NUCKS1Q9H1E3 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC28.81■■■□□ 2.2
NUCKS1Q9H1E3 AL135925.1-201ENST00000605920 1701 ntBASIC28.8■■■□□ 2.2
NUCKS1Q9H1E3 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
NUCKS1Q9H1E3 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
NUCKS1Q9H1E3 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
NUCKS1Q9H1E3 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC28.78■■■□□ 2.2
NUCKS1Q9H1E3 SETD8P1-201ENST00000623146 1180 ntBASIC28.77■■■□□ 2.2
NUCKS1Q9H1E3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
NUCKS1Q9H1E3 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
NUCKS1Q9H1E3 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
NUCKS1Q9H1E3 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
NUCKS1Q9H1E3 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
NUCKS1Q9H1E3 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC28.74■■■□□ 2.19
NUCKS1Q9H1E3 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
NUCKS1Q9H1E3 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
NUCKS1Q9H1E3 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC28.73■■■□□ 2.19
NUCKS1Q9H1E3 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
NUCKS1Q9H1E3 AC139426.1-201ENST00000568218 2529 ntBASIC28.73■■■□□ 2.19
NUCKS1Q9H1E3 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC28.73■■■□□ 2.19
NUCKS1Q9H1E3 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
NUCKS1Q9H1E3 WASH5P-204ENST00000632292 975 ntBASIC28.71■■■□□ 2.19
NUCKS1Q9H1E3 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.7■■■□□ 2.19
NUCKS1Q9H1E3 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
NUCKS1Q9H1E3 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.7■■■□□ 2.18
NUCKS1Q9H1E3 SHF-206ENST00000560471 2499 ntTSL 5 BASIC28.69■■■□□ 2.18
NUCKS1Q9H1E3 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC28.69■■■□□ 2.18
NUCKS1Q9H1E3 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
NUCKS1Q9H1E3 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NUCKS1Q9H1E3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
NUCKS1Q9H1E3 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
NUCKS1Q9H1E3 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
NUCKS1Q9H1E3 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC28.66■■■□□ 2.18
NUCKS1Q9H1E3 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
NUCKS1Q9H1E3 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC28.66■■■□□ 2.18
NUCKS1Q9H1E3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.66■■■□□ 2.18
NUCKS1Q9H1E3 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC28.65■■■□□ 2.18
NUCKS1Q9H1E3 AC136428.2-201ENST00000563187 214 ntBASIC28.65■■■□□ 2.18
NUCKS1Q9H1E3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
NUCKS1Q9H1E3 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC28.64■■■□□ 2.18
NUCKS1Q9H1E3 AC097358.2-201ENST00000607541 1159 ntBASIC28.64■■■□□ 2.18
NUCKS1Q9H1E3 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
NUCKS1Q9H1E3 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NUCKS1Q9H1E3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
NUCKS1Q9H1E3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
NUCKS1Q9H1E3 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
NUCKS1Q9H1E3 AL133380.1-201ENST00000506013 324 ntBASIC28.6■■■□□ 2.17
NUCKS1Q9H1E3 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC28.59■■■□□ 2.17
NUCKS1Q9H1E3 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
NUCKS1Q9H1E3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.58■■■□□ 2.17
NUCKS1Q9H1E3 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
NUCKS1Q9H1E3 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
NUCKS1Q9H1E3 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
NUCKS1Q9H1E3 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
NUCKS1Q9H1E3 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
NUCKS1Q9H1E3 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC28.55■■■□□ 2.16
NUCKS1Q9H1E3 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
NUCKS1Q9H1E3 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC28.54■■■□□ 2.16
NUCKS1Q9H1E3 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
NUCKS1Q9H1E3 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
NUCKS1Q9H1E3 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NUCKS1Q9H1E3 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC28.53■■■□□ 2.16
NUCKS1Q9H1E3 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
NUCKS1Q9H1E3 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
NUCKS1Q9H1E3 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC28.51■■■□□ 2.15
NUCKS1Q9H1E3 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.5■■■□□ 2.15
NUCKS1Q9H1E3 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
NUCKS1Q9H1E3 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC28.49■■■□□ 2.15
NUCKS1Q9H1E3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
NUCKS1Q9H1E3 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
NUCKS1Q9H1E3 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
NUCKS1Q9H1E3 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC28.48■■■□□ 2.15
NUCKS1Q9H1E3 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
NUCKS1Q9H1E3 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
NUCKS1Q9H1E3 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
NUCKS1Q9H1E3 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
NUCKS1Q9H1E3 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
NUCKS1Q9H1E3 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.45■■■□□ 2.14
NUCKS1Q9H1E3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.44■■■□□ 2.14
NUCKS1Q9H1E3 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
NUCKS1Q9H1E3 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC28.44■■■□□ 2.14
NUCKS1Q9H1E3 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
NUCKS1Q9H1E3 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
NUCKS1Q9H1E3 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
NUCKS1Q9H1E3 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.42■■■□□ 2.14
NUCKS1Q9H1E3 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC28.42■■■□□ 2.14
Retrieved 100 of 98,524 protein–RNA pairs in 421 ms