Protein–RNA interactions for Protein: Q96EY7

PTCD3, Pentatricopeptide repeat domain-containing protein 3, mitochondrial, humanhuman

Known RBP Predictions only

Length 689 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3Q96EY7 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
PTCD3Q96EY7 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.4■■□□□ 1.82
PTCD3Q96EY7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD3Q96EY7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
PTCD3Q96EY7 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.39■■□□□ 1.82
PTCD3Q96EY7 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PTCD3Q96EY7 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.38■■□□□ 1.81
PTCD3Q96EY7 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PTCD3Q96EY7 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC26.35■■□□□ 1.81
PTCD3Q96EY7 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PTCD3Q96EY7 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.34■■□□□ 1.81
PTCD3Q96EY7 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PTCD3Q96EY7 ST7-AS1-201ENST00000456775 1889 ntBASIC26.33■■□□□ 1.81
PTCD3Q96EY7 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PTCD3Q96EY7 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PTCD3Q96EY7 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.3■■□□□ 1.8
PTCD3Q96EY7 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD3Q96EY7 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PTCD3Q96EY7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
PTCD3Q96EY7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD3Q96EY7 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD3Q96EY7 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.27■■□□□ 1.8
PTCD3Q96EY7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD3Q96EY7 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD3Q96EY7 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.25■■□□□ 1.79
PTCD3Q96EY7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD3Q96EY7 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC26.23■■□□□ 1.79
PTCD3Q96EY7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC26.22■■□□□ 1.79
PTCD3Q96EY7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PTCD3Q96EY7 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PTCD3Q96EY7 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
PTCD3Q96EY7 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
PTCD3Q96EY7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC26.2■■□□□ 1.78
PTCD3Q96EY7 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.2■■□□□ 1.78
PTCD3Q96EY7 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCD3Q96EY7 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC26.19■■□□□ 1.78
PTCD3Q96EY7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
PTCD3Q96EY7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
PTCD3Q96EY7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.17■■□□□ 1.78
PTCD3Q96EY7 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
PTCD3Q96EY7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC26.16■■□□□ 1.78
PTCD3Q96EY7 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PTCD3Q96EY7 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.15■■□□□ 1.78
PTCD3Q96EY7 AC142086.6-201ENST00000621154 1765 ntBASIC26.15■■□□□ 1.78
PTCD3Q96EY7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC26.14■■□□□ 1.78
PTCD3Q96EY7 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PTCD3Q96EY7 AL133380.1-201ENST00000506013 324 ntBASIC26.14■■□□□ 1.78
PTCD3Q96EY7 RARRES2P7-201ENST00000567349 469 ntBASIC26.14■■□□□ 1.78
PTCD3Q96EY7 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PTCD3Q96EY7 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
PTCD3Q96EY7 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.13■■□□□ 1.77
PTCD3Q96EY7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
PTCD3Q96EY7 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
PTCD3Q96EY7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
PTCD3Q96EY7 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
PTCD3Q96EY7 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTCD3Q96EY7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
PTCD3Q96EY7 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PTCD3Q96EY7 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PTCD3Q96EY7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTCD3Q96EY7 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC26.07■■□□□ 1.76
PTCD3Q96EY7 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
PTCD3Q96EY7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.06■■□□□ 1.76
PTCD3Q96EY7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PTCD3Q96EY7 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
PTCD3Q96EY7 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 SETD8P1-201ENST00000623146 1180 ntBASIC26.04■■□□□ 1.76
PTCD3Q96EY7 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PTCD3Q96EY7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
PTCD3Q96EY7 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 WASH5P-204ENST00000632292 975 ntBASIC26.02■■□□□ 1.76
PTCD3Q96EY7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
PTCD3Q96EY7 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PTCD3Q96EY7 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC26■■□□□ 1.75
PTCD3Q96EY7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
PTCD3Q96EY7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PTCD3Q96EY7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms