Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC28.46■■■□□ 2.15
TTC28Q96AY4 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC28.46■■■□□ 2.15
TTC28Q96AY4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
TTC28Q96AY4 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC28.46■■■□□ 2.15
TTC28Q96AY4 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
TTC28Q96AY4 AC012354.3-201ENST00000623734 483 ntBASIC28.45■■■□□ 2.14
TTC28Q96AY4 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
TTC28Q96AY4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
TTC28Q96AY4 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC28.44■■■□□ 2.14
TTC28Q96AY4 NTF6A-201ENST00000591175 560 ntBASIC28.43■■■□□ 2.14
TTC28Q96AY4 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
TTC28Q96AY4 METRNL-202ENST00000570778 967 ntTSL 5 BASIC28.4■■■□□ 2.14
TTC28Q96AY4 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
TTC28Q96AY4 AL592295.1-201ENST00000400984 884 ntBASIC28.39■■■□□ 2.14
TTC28Q96AY4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
TTC28Q96AY4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC28.36■■■□□ 2.13
TTC28Q96AY4 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
TTC28Q96AY4 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
TTC28Q96AY4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
TTC28Q96AY4 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
TTC28Q96AY4 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
TTC28Q96AY4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
TTC28Q96AY4 DUX4L13-201ENST00000554103 1267 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L15-201ENST00000611059 1267 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L23-201ENST00000615195 1269 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L24-201ENST00000617576 1269 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L22-201ENST00000618238 1269 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L20-201ENST00000619712 1269 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L21-201ENST00000622058 1269 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L10-201ENST00000622460 1267 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 DUX4L25-201ENST00000624915 1269 ntBASIC28.32■■■□□ 2.12
TTC28Q96AY4 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC28Q96AY4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC28Q96AY4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.32■■■□□ 2.12
TTC28Q96AY4 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC28Q96AY4 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
TTC28Q96AY4 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC28Q96AY4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
TTC28Q96AY4 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
TTC28Q96AY4 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
TTC28Q96AY4 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
TTC28Q96AY4 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
TTC28Q96AY4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.29■■■□□ 2.12
TTC28Q96AY4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
TTC28Q96AY4 MIR6090-201ENST00000622481 60 ntBASIC28.27■■■□□ 2.12
TTC28Q96AY4 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
TTC28Q96AY4 GPX1-201ENST00000419349 1106 ntBASIC28.27■■■□□ 2.12
TTC28Q96AY4 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
TTC28Q96AY4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
TTC28Q96AY4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC28.24■■■□□ 2.11
TTC28Q96AY4 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
TTC28Q96AY4 AC108673.1-201ENST00000510422 1159 ntBASIC28.23■■■□□ 2.11
TTC28Q96AY4 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
TTC28Q96AY4 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
TTC28Q96AY4 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC28.22■■■□□ 2.11
TTC28Q96AY4 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
TTC28Q96AY4 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
TTC28Q96AY4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
TTC28Q96AY4 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.19■■■□□ 2.1
TTC28Q96AY4 MTURN-203ENST00000409688 843 ntTSL 2 BASIC28.18■■■□□ 2.1
TTC28Q96AY4 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.17■■■□□ 2.1
TTC28Q96AY4 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC28.17■■■□□ 2.1
TTC28Q96AY4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.17■■■□□ 2.1
TTC28Q96AY4 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
TTC28Q96AY4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
TTC28Q96AY4 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.16■■■□□ 2.1
TTC28Q96AY4 AL033527.3-201ENST00000566366 1196 ntBASIC28.16■■■□□ 2.1
TTC28Q96AY4 RARRES2P1-201ENST00000474487 481 ntBASIC28.15■■■□□ 2.1
TTC28Q96AY4 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
TTC28Q96AY4 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC28.14■■■□□ 2.1
TTC28Q96AY4 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC28.14■■■□□ 2.09
TTC28Q96AY4 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC28.14■■■□□ 2.09
TTC28Q96AY4 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC28.13■■■□□ 2.09
TTC28Q96AY4 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC28.13■■■□□ 2.09
TTC28Q96AY4 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
TTC28Q96AY4 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC28.1■■■□□ 2.09
TTC28Q96AY4 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.1■■■□□ 2.09
TTC28Q96AY4 HES6-205ENST00000409356 528 ntTSL 2 BASIC28.1■■■□□ 2.09
TTC28Q96AY4 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
TTC28Q96AY4 AC008813.1-201ENST00000536597 885 ntBASIC28.08■■■□□ 2.09
TTC28Q96AY4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.08■■■□□ 2.09
TTC28Q96AY4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC28.07■■■□□ 2.08
TTC28Q96AY4 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 AL035685.1-201ENST00000636663 812 ntBASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
TTC28Q96AY4 MIR935-201ENST00000401179 91 ntBASIC28.06■■■□□ 2.08
TTC28Q96AY4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC28.06■■■□□ 2.08
TTC28Q96AY4 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.06■■■□□ 2.08
TTC28Q96AY4 WASH5P-204ENST00000632292 975 ntBASIC28.04■■■□□ 2.08
TTC28Q96AY4 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC28.03■■■□□ 2.08
TTC28Q96AY4 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC28.03■■■□□ 2.08
TTC28Q96AY4 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms