Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC35.1■■■■□ 3.21
RTF1Q92541 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC35.09■■■■□ 3.21
RTF1Q92541 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC35.07■■■■□ 3.2
RTF1Q92541 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC35.06■■■■□ 3.2
RTF1Q92541 MLEC-202ENST00000412616 841 ntTSL 3 BASIC35.06■■■■□ 3.2
RTF1Q92541 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
RTF1Q92541 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC35.04■■■■□ 3.2
RTF1Q92541 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC35.04■■■■□ 3.2
RTF1Q92541 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC35.03■■■■□ 3.2
RTF1Q92541 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
RTF1Q92541 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC35.03■■■■□ 3.2
RTF1Q92541 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC35.03■■■■□ 3.2
RTF1Q92541 ABHD17AP4-201ENST00000411545 909 ntBASIC35.02■■■■□ 3.2
RTF1Q92541 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.2
RTF1Q92541 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC35.01■■■■□ 3.2
RTF1Q92541 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.01■■■■□ 3.19
RTF1Q92541 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC35.01■■■■□ 3.19
RTF1Q92541 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC35■■■■□ 3.19
RTF1Q92541 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC34.98■■■■□ 3.19
RTF1Q92541 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC34.97■■■■□ 3.19
RTF1Q92541 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
RTF1Q92541 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC34.96■■■■□ 3.19
RTF1Q92541 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC34.96■■■■□ 3.19
RTF1Q92541 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
RTF1Q92541 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.94■■■■□ 3.18
RTF1Q92541 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC34.94■■■■□ 3.18
RTF1Q92541 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC34.94■■■■□ 3.18
RTF1Q92541 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.93■■■■□ 3.18
RTF1Q92541 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.93■■■■□ 3.18
RTF1Q92541 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
RTF1Q92541 AL161658.1-201ENST00000623641 1967 ntBASIC34.93■■■■□ 3.18
RTF1Q92541 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.92■■■■□ 3.18
RTF1Q92541 AC108673.1-201ENST00000510422 1159 ntBASIC34.91■■■■□ 3.18
RTF1Q92541 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC34.91■■■■□ 3.18
RTF1Q92541 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC34.89■■■■□ 3.18
RTF1Q92541 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
RTF1Q92541 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
RTF1Q92541 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC34.88■■■■□ 3.17
RTF1Q92541 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
RTF1Q92541 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC34.87■■■■□ 3.17
RTF1Q92541 CIB2-204ENST00000557846 934 ntTSL 3 BASIC34.86■■■■□ 3.17
RTF1Q92541 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC34.86■■■■□ 3.17
RTF1Q92541 MIR6090-201ENST00000622481 60 ntBASIC34.86■■■■□ 3.17
RTF1Q92541 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
RTF1Q92541 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC34.85■■■■□ 3.17
RTF1Q92541 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC34.85■■■■□ 3.17
RTF1Q92541 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC34.85■■■■□ 3.17
RTF1Q92541 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
RTF1Q92541 MIR7108-201ENST00000614319 87 ntBASIC34.84■■■■□ 3.17
RTF1Q92541 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC34.83■■■■□ 3.17
RTF1Q92541 DUX4L29-201ENST00000425409 679 ntBASIC34.83■■■■□ 3.17
RTF1Q92541 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC34.83■■■■□ 3.17
RTF1Q92541 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.83■■■■□ 3.17
RTF1Q92541 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC34.83■■■■□ 3.17
RTF1Q92541 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC34.82■■■■□ 3.17
RTF1Q92541 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.16
RTF1Q92541 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
RTF1Q92541 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC34.81■■■■□ 3.16
RTF1Q92541 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
RTF1Q92541 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC34.8■■■■□ 3.16
RTF1Q92541 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC34.8■■■■□ 3.16
RTF1Q92541 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC34.79■■■■□ 3.16
RTF1Q92541 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
RTF1Q92541 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC34.79■■■■□ 3.16
RTF1Q92541 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC34.78■■■■□ 3.16
RTF1Q92541 ZNRF2P2-203ENST00000454624 420 ntBASIC34.77■■■■□ 3.16
RTF1Q92541 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC34.77■■■■□ 3.16
RTF1Q92541 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC34.77■■■■□ 3.16
RTF1Q92541 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC34.76■■■■□ 3.16
RTF1Q92541 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC34.76■■■■□ 3.16
RTF1Q92541 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC34.76■■■■□ 3.15
RTF1Q92541 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
RTF1Q92541 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC34.74■■■■□ 3.15
RTF1Q92541 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC34.74■■■■□ 3.15
RTF1Q92541 AC021231.2-201ENST00000594613 730 ntBASIC34.74■■■■□ 3.15
RTF1Q92541 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC34.74■■■■□ 3.15
RTF1Q92541 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC34.73■■■■□ 3.15
RTF1Q92541 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC34.73■■■■□ 3.15
RTF1Q92541 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC34.73■■■■□ 3.15
RTF1Q92541 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC34.72■■■■□ 3.15
RTF1Q92541 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC34.72■■■■□ 3.15
RTF1Q92541 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC34.72■■■■□ 3.15
RTF1Q92541 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC34.71■■■■□ 3.15
RTF1Q92541 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
RTF1Q92541 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
RTF1Q92541 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC34.71■■■■□ 3.15
RTF1Q92541 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
RTF1Q92541 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC34.7■■■■□ 3.15
RTF1Q92541 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC34.7■■■■□ 3.15
RTF1Q92541 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.14
RTF1Q92541 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC34.69■■■■□ 3.14
RTF1Q92541 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC34.69■■■■□ 3.14
RTF1Q92541 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
RTF1Q92541 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC34.68■■■■□ 3.14
RTF1Q92541 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.68■■■■□ 3.14
RTF1Q92541 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC34.67■■■■□ 3.14
RTF1Q92541 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC34.66■■■■□ 3.14
RTF1Q92541 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
RTF1Q92541 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC34.66■■■■□ 3.14
RTF1Q92541 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC34.65■■■■□ 3.14
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms