Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL7A1Q02388 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL7A1Q02388 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL7A1Q02388 WASH5P-204ENST00000632292 975 ntBASIC19.72■□□□□ 0.75
COL7A1Q02388 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL7A1Q02388 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC19.7■□□□□ 0.74
COL7A1Q02388 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL7A1Q02388 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
COL7A1Q02388 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL7A1Q02388 CIB2-204ENST00000557846 934 ntTSL 3 BASIC19.69■□□□□ 0.74
COL7A1Q02388 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
COL7A1Q02388 LINC01971-201ENST00000617888 1048 ntBASIC19.69■□□□□ 0.74
COL7A1Q02388 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
COL7A1Q02388 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL7A1Q02388 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL7A1Q02388 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL7A1Q02388 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL7A1Q02388 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL7A1Q02388 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL7A1Q02388 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC19.67■□□□□ 0.74
COL7A1Q02388 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
COL7A1Q02388 DUX4L11-201ENST00000611504 1267 ntBASIC19.67■□□□□ 0.74
COL7A1Q02388 DUX4L12-201ENST00000614593 1267 ntBASIC19.67■□□□□ 0.74
COL7A1Q02388 DUX4L14-201ENST00000621227 1267 ntBASIC19.67■□□□□ 0.74
COL7A1Q02388 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL7A1Q02388 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC19.65■□□□□ 0.74
COL7A1Q02388 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL7A1Q02388 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC19.65■□□□□ 0.74
COL7A1Q02388 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL7A1Q02388 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.63■□□□□ 0.73
COL7A1Q02388 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.63■□□□□ 0.73
COL7A1Q02388 MIR6090-201ENST00000622481 60 ntBASIC19.63■□□□□ 0.73
COL7A1Q02388 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.62■□□□□ 0.73
COL7A1Q02388 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
COL7A1Q02388 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL7A1Q02388 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC19.61■□□□□ 0.73
COL7A1Q02388 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
COL7A1Q02388 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
COL7A1Q02388 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC19.6■□□□□ 0.73
COL7A1Q02388 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
COL7A1Q02388 AC108673.1-201ENST00000510422 1159 ntBASIC19.6■□□□□ 0.73
COL7A1Q02388 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL7A1Q02388 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
COL7A1Q02388 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
COL7A1Q02388 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
COL7A1Q02388 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
COL7A1Q02388 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.58■□□□□ 0.72
COL7A1Q02388 ABHD17AP5-201ENST00000580133 923 ntBASIC19.57■□□□□ 0.72
COL7A1Q02388 SRP68-213ENST00000629930 165 ntTSL 5 BASIC19.57■□□□□ 0.72
COL7A1Q02388 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL7A1Q02388 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL7A1Q02388 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL7A1Q02388 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC19.55■□□□□ 0.72
COL7A1Q02388 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL7A1Q02388 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL7A1Q02388 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC19.54■□□□□ 0.72
COL7A1Q02388 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
COL7A1Q02388 RNF126P1-201ENST00000567452 1320 ntBASIC19.53■□□□□ 0.72
COL7A1Q02388 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL7A1Q02388 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL7A1Q02388 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC19.52■□□□□ 0.72
COL7A1Q02388 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L13-201ENST00000554103 1267 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L15-201ENST00000611059 1267 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L23-201ENST00000615195 1269 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L24-201ENST00000617576 1269 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L22-201ENST00000618238 1269 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L20-201ENST00000619712 1269 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L21-201ENST00000622058 1269 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L10-201ENST00000622460 1267 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 DUX4L25-201ENST00000624915 1269 ntBASIC19.52■□□□□ 0.72
COL7A1Q02388 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COL7A1Q02388 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL7A1Q02388 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.5■□□□□ 0.71
COL7A1Q02388 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL7A1Q02388 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL7A1Q02388 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL7A1Q02388 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL7A1Q02388 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.48■□□□□ 0.71
COL7A1Q02388 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL7A1Q02388 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL7A1Q02388 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL7A1Q02388 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL7A1Q02388 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC19.46■□□□□ 0.71
COL7A1Q02388 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
COL7A1Q02388 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL7A1Q02388 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL7A1Q02388 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL7A1Q02388 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL7A1Q02388 GPX1-201ENST00000419349 1106 ntBASIC19.44■□□□□ 0.7
COL7A1Q02388 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
COL7A1Q02388 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL7A1Q02388 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL7A1Q02388 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.43■□□□□ 0.7
COL7A1Q02388 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.43■□□□□ 0.7
COL7A1Q02388 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC19.43■□□□□ 0.7
COL7A1Q02388 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.42■□□□□ 0.7
COL7A1Q02388 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL7A1Q02388 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL7A1Q02388 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms