Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC30.73■■■□□ 2.51
HOXC6P09630 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.73■■■□□ 2.51
HOXC6P09630 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
HOXC6P09630 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC30.72■■■□□ 2.51
HOXC6P09630 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
HOXC6P09630 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.71■■■□□ 2.51
HOXC6P09630 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
HOXC6P09630 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
HOXC6P09630 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
HOXC6P09630 MIR3648-2-201ENST00000581792 180 ntBASIC30.69■■■□□ 2.5
HOXC6P09630 MIR3648-1-201ENST00000615959 180 ntBASIC30.69■■■□□ 2.5
HOXC6P09630 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC30.68■■■□□ 2.5
HOXC6P09630 RNF166-209ENST00000567844 633 ntTSL 5 BASIC30.68■■■□□ 2.5
HOXC6P09630 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.67■■■□□ 2.5
HOXC6P09630 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC30.67■■■□□ 2.5
HOXC6P09630 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
HOXC6P09630 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
HOXC6P09630 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
HOXC6P09630 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.65■■■□□ 2.5
HOXC6P09630 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.63■■■□□ 2.49
HOXC6P09630 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
HOXC6P09630 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC30.63■■■□□ 2.49
HOXC6P09630 AC016575.1-201ENST00000607026 382 ntBASIC30.63■■■□□ 2.49
HOXC6P09630 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.63■■■□□ 2.49
HOXC6P09630 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.63■■■□□ 2.49
HOXC6P09630 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.62■■■□□ 2.49
HOXC6P09630 LINC01971-201ENST00000617888 1048 ntBASIC30.62■■■□□ 2.49
HOXC6P09630 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
HOXC6P09630 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC30.61■■■□□ 2.49
HOXC6P09630 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC30.61■■■□□ 2.49
HOXC6P09630 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
HOXC6P09630 DUX4L11-201ENST00000611504 1267 ntBASIC30.6■■■□□ 2.49
HOXC6P09630 DUX4L12-201ENST00000614593 1267 ntBASIC30.6■■■□□ 2.49
HOXC6P09630 DUX4L14-201ENST00000621227 1267 ntBASIC30.6■■■□□ 2.49
HOXC6P09630 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
HOXC6P09630 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
HOXC6P09630 AGPS-202ENST00000409888 815 ntTSL 4 BASIC30.59■■■□□ 2.49
HOXC6P09630 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.58■■■□□ 2.49
HOXC6P09630 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
HOXC6P09630 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC30.58■■■□□ 2.49
HOXC6P09630 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.57■■■□□ 2.48
HOXC6P09630 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
HOXC6P09630 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
HOXC6P09630 CR559946.2-201ENST00000623684 991 ntBASIC30.56■■■□□ 2.48
HOXC6P09630 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.55■■■□□ 2.48
HOXC6P09630 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC30.55■■■□□ 2.48
HOXC6P09630 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
HOXC6P09630 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC30.51■■■□□ 2.47
HOXC6P09630 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC30.51■■■□□ 2.47
HOXC6P09630 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.51■■■□□ 2.47
HOXC6P09630 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC30.5■■■□□ 2.47
HOXC6P09630 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
HOXC6P09630 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.49■■■□□ 2.47
HOXC6P09630 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
HOXC6P09630 HSD17B1P1-201ENST00000590052 955 ntBASIC30.48■■■□□ 2.47
HOXC6P09630 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.48■■■□□ 2.47
HOXC6P09630 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.48■■■□□ 2.47
HOXC6P09630 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
HOXC6P09630 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
HOXC6P09630 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.47■■■□□ 2.47
HOXC6P09630 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.47■■■□□ 2.47
HOXC6P09630 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.46■■■□□ 2.47
HOXC6P09630 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
HOXC6P09630 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC30.45■■■□□ 2.47
HOXC6P09630 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC30.45■■■□□ 2.47
HOXC6P09630 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC30.45■■■□□ 2.46
HOXC6P09630 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.44■■■□□ 2.46
HOXC6P09630 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC30.44■■■□□ 2.46
HOXC6P09630 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
HOXC6P09630 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.43■■■□□ 2.46
HOXC6P09630 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC30.43■■■□□ 2.46
HOXC6P09630 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC30.43■■■□□ 2.46
HOXC6P09630 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
HOXC6P09630 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
HOXC6P09630 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
HOXC6P09630 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
HOXC6P09630 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.39■■■□□ 2.46
HOXC6P09630 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.46
HOXC6P09630 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC30.37■■■□□ 2.45
HOXC6P09630 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
HOXC6P09630 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.36■■■□□ 2.45
HOXC6P09630 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
HOXC6P09630 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
HOXC6P09630 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
HOXC6P09630 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
HOXC6P09630 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
HOXC6P09630 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
HOXC6P09630 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
HOXC6P09630 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.32■■■□□ 2.44
HOXC6P09630 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
HOXC6P09630 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC30.31■■■□□ 2.44
HOXC6P09630 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L13-201ENST00000554103 1267 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L15-201ENST00000611059 1267 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L23-201ENST00000615195 1269 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L24-201ENST00000617576 1269 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L22-201ENST00000618238 1269 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L20-201ENST00000619712 1269 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L21-201ENST00000622058 1269 ntBASIC30.29■■■□□ 2.44
HOXC6P09630 DUX4L10-201ENST00000622460 1267 ntBASIC30.29■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms