Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 SRP68-213ENST00000629930 165 ntTSL 5 BASIC12.42□□□□□ -0.42
USH2AO75445 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
USH2AO75445 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
USH2AO75445 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USH2AO75445 AC018358.1-201ENST00000631079 1402 ntBASIC12.41□□□□□ -0.42
USH2AO75445 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC12.41□□□□□ -0.42
USH2AO75445 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
USH2AO75445 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC12.4□□□□□ -0.42
USH2AO75445 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
USH2AO75445 DUX4L13-201ENST00000554103 1267 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L15-201ENST00000611059 1267 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L23-201ENST00000615195 1269 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L24-201ENST00000617576 1269 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L22-201ENST00000618238 1269 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L20-201ENST00000619712 1269 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L21-201ENST00000622058 1269 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L10-201ENST00000622460 1267 ntBASIC12.4□□□□□ -0.43
USH2AO75445 DUX4L25-201ENST00000624915 1269 ntBASIC12.4□□□□□ -0.43
USH2AO75445 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC12.4□□□□□ -0.43
USH2AO75445 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
USH2AO75445 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
USH2AO75445 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC12.39□□□□□ -0.43
USH2AO75445 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC12.39□□□□□ -0.43
USH2AO75445 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
USH2AO75445 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC12.38□□□□□ -0.43
USH2AO75445 AC019069.1-201ENST00000610008 1333 ntBASIC12.38□□□□□ -0.43
USH2AO75445 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
USH2AO75445 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
USH2AO75445 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
USH2AO75445 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USH2AO75445 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
USH2AO75445 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
USH2AO75445 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC12.37□□□□□ -0.43
USH2AO75445 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
USH2AO75445 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
USH2AO75445 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
USH2AO75445 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC12.36□□□□□ -0.43
USH2AO75445 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
USH2AO75445 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
USH2AO75445 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC12.34□□□□□ -0.43
USH2AO75445 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC12.34□□□□□ -0.43
USH2AO75445 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC12.34□□□□□ -0.43
USH2AO75445 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
USH2AO75445 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
USH2AO75445 AL033527.3-201ENST00000566366 1196 ntBASIC12.33□□□□□ -0.44
USH2AO75445 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
USH2AO75445 MTURN-203ENST00000409688 843 ntTSL 2 BASIC12.33□□□□□ -0.44
USH2AO75445 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC12.33□□□□□ -0.44
USH2AO75445 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC12.33□□□□□ -0.44
USH2AO75445 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC12.32□□□□□ -0.44
USH2AO75445 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC12.32□□□□□ -0.44
USH2AO75445 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC12.32□□□□□ -0.44
USH2AO75445 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC12.32□□□□□ -0.44
USH2AO75445 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
USH2AO75445 WASH5P-204ENST00000632292 975 ntBASIC12.31□□□□□ -0.44
USH2AO75445 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USH2AO75445 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
USH2AO75445 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
USH2AO75445 HES6-205ENST00000409356 528 ntTSL 2 BASIC12.3□□□□□ -0.44
USH2AO75445 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
USH2AO75445 AC108673.1-201ENST00000510422 1159 ntBASIC12.3□□□□□ -0.44
USH2AO75445 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
USH2AO75445 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USH2AO75445 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
USH2AO75445 NTF6A-201ENST00000591175 560 ntBASIC12.28□□□□□ -0.44
USH2AO75445 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC12.28□□□□□ -0.44
USH2AO75445 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC12.28□□□□□ -0.44
USH2AO75445 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC12.28□□□□□ -0.44
USH2AO75445 ILK-212ENST00000532063 1617 ntTSL 2 BASIC12.28□□□□□ -0.44
USH2AO75445 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC12.28□□□□□ -0.44
USH2AO75445 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.44
USH2AO75445 GPX1-201ENST00000419349 1106 ntBASIC12.27□□□□□ -0.44
USH2AO75445 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.27□□□□□ -0.45
USH2AO75445 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC12.27□□□□□ -0.45
USH2AO75445 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
USH2AO75445 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC12.27□□□□□ -0.45
USH2AO75445 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC12.27□□□□□ -0.45
USH2AO75445 AC012354.3-201ENST00000623734 483 ntBASIC12.27□□□□□ -0.45
USH2AO75445 AC008813.1-201ENST00000536597 885 ntBASIC12.26□□□□□ -0.45
USH2AO75445 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC12.26□□□□□ -0.45
USH2AO75445 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
USH2AO75445 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
USH2AO75445 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
USH2AO75445 GFER-205ENST00000569451 517 ntTSL 5 BASIC12.25□□□□□ -0.45
USH2AO75445 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
USH2AO75445 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
USH2AO75445 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
USH2AO75445 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
USH2AO75445 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
USH2AO75445 RARRES2P1-201ENST00000474487 481 ntBASIC12.23□□□□□ -0.45
USH2AO75445 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms