Protein–RNA interactions for Protein: O43924

PDE6D, Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta, humanhuman

Predictions only

Length 150 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6DO43924 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PDE6DO43924 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
PDE6DO43924 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PDE6DO43924 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PDE6DO43924 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PDE6DO43924 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PDE6DO43924 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
PDE6DO43924 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
PDE6DO43924 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDE6DO43924 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PDE6DO43924 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PDE6DO43924 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.69■□□□□ 0.9
PDE6DO43924 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PDE6DO43924 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDE6DO43924 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDE6DO43924 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PDE6DO43924 CREM-210ENST00000374721 2020 ntTSL 5 BASIC20.68■□□□□ 0.9
PDE6DO43924 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDE6DO43924 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.67■□□□□ 0.9
PDE6DO43924 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDE6DO43924 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDE6DO43924 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDE6DO43924 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDE6DO43924 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
PDE6DO43924 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
PDE6DO43924 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDE6DO43924 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
PDE6DO43924 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC20.65■□□□□ 0.9
PDE6DO43924 AC015813.7-201ENST00000623294 581 ntBASIC20.65■□□□□ 0.9
PDE6DO43924 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
PDE6DO43924 INO80B-203ENST00000409917 796 ntTSL 2 BASIC20.64■□□□□ 0.89
PDE6DO43924 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDE6DO43924 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDE6DO43924 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
PDE6DO43924 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDE6DO43924 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
PDE6DO43924 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
PDE6DO43924 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
PDE6DO43924 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
PDE6DO43924 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
PDE6DO43924 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDE6DO43924 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
PDE6DO43924 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDE6DO43924 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PDE6DO43924 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PDE6DO43924 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC20.58■□□□□ 0.88
PDE6DO43924 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PDE6DO43924 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDE6DO43924 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PDE6DO43924 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDE6DO43924 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PDE6DO43924 AL121749.1-202ENST00000609313 2153 ntBASIC20.56■□□□□ 0.88
PDE6DO43924 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC20.56■□□□□ 0.88
PDE6DO43924 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PDE6DO43924 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PDE6DO43924 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
PDE6DO43924 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDE6DO43924 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PDE6DO43924 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PDE6DO43924 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PDE6DO43924 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDE6DO43924 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDE6DO43924 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PDE6DO43924 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
PDE6DO43924 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.52■□□□□ 0.88
PDE6DO43924 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
PDE6DO43924 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PDE6DO43924 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
PDE6DO43924 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDE6DO43924 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDE6DO43924 SHF-207ENST00000560540 2062 ntTSL 5 BASIC20.5■□□□□ 0.87
PDE6DO43924 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
PDE6DO43924 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PDE6DO43924 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.49■□□□□ 0.87
PDE6DO43924 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.49■□□□□ 0.87
PDE6DO43924 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PDE6DO43924 AL135925.1-201ENST00000605920 1701 ntBASIC20.48■□□□□ 0.87
PDE6DO43924 AC135731.1-201ENST00000569415 2548 ntBASIC20.48■□□□□ 0.87
PDE6DO43924 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDE6DO43924 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.47■□□□□ 0.87
PDE6DO43924 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
PDE6DO43924 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
PDE6DO43924 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
PDE6DO43924 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
PDE6DO43924 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
PDE6DO43924 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.45■□□□□ 0.86
PDE6DO43924 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.44■□□□□ 0.86
PDE6DO43924 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
PDE6DO43924 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
PDE6DO43924 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
PDE6DO43924 DRD5P2-201ENST00000421395 2012 ntBASIC20.43■□□□□ 0.86
PDE6DO43924 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDE6DO43924 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDE6DO43924 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
PDE6DO43924 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
PDE6DO43924 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDE6DO43924 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
PDE6DO43924 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
PDE6DO43924 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
PDE6DO43924 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms