Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 AC034268.1-201ENST00000441047 882 ntBASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 AL162430.1-201ENST00000480705 870 ntBASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 AC005229.4-201ENST00000610085 2198 ntBASIC19.9■□□□□ 0.78
ATG4BQ9Y4P1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 KRT18P61-201ENST00000585825 1298 ntBASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 AC104187.1-201ENST00000607510 612 ntBASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
ATG4BQ9Y4P1 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 AC138907.5-202ENST00000569484 235 ntBASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
ATG4BQ9Y4P1 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 AC061975.6-201ENST00000579045 1553 ntBASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
ATG4BQ9Y4P1 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.86■□□□□ 0.77
ATG4BQ9Y4P1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.85■□□□□ 0.77
ATG4BQ9Y4P1 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms