Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.89■□□□□ 0.93
VPS9D1Q9Y2B5 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS9D1Q9Y2B5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS9D1Q9Y2B5 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
VPS9D1Q9Y2B5 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 KRT87P-202ENST00000534226 1464 ntBASIC20.88■□□□□ 0.93
VPS9D1Q9Y2B5 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 AL049796.1-201ENST00000565336 1766 ntBASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
VPS9D1Q9Y2B5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 AC123595.1-201ENST00000440769 1046 ntBASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 AC005229.4-201ENST00000610085 2198 ntBASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
VPS9D1Q9Y2B5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS9D1Q9Y2B5 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS9D1Q9Y2B5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 AC008175.2-201ENST00000612840 297 ntBASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS9D1Q9Y2B5 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS9D1Q9Y2B5 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS9D1Q9Y2B5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
VPS9D1Q9Y2B5 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 POU5F1P4-201ENST00000413175 1085 ntBASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 YBX1P1-201ENST00000445822 960 ntBASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS9D1Q9Y2B5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 AF106564.1-201ENST00000607058 2553 ntBASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.81■□□□□ 0.92
VPS9D1Q9Y2B5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 127.7 ms