Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.51■□□□□ 0.71
USE1Q9NZ43 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
USE1Q9NZ43 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 AC021242.3-201ENST00000607598 1377 ntBASIC19.5■□□□□ 0.71
USE1Q9NZ43 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.5■□□□□ 0.71
USE1Q9NZ43 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
USE1Q9NZ43 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.5■□□□□ 0.71
USE1Q9NZ43 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
USE1Q9NZ43 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.49■□□□□ 0.71
USE1Q9NZ43 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC19.49■□□□□ 0.71
USE1Q9NZ43 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
USE1Q9NZ43 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
USE1Q9NZ43 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
USE1Q9NZ43 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 AC103834.1-201ENST00000520383 144 ntBASIC19.48■□□□□ 0.71
USE1Q9NZ43 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
USE1Q9NZ43 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.48■□□□□ 0.71
USE1Q9NZ43 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 AC103724.3-201ENST00000564481 992 ntBASIC19.47■□□□□ 0.71
USE1Q9NZ43 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
USE1Q9NZ43 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
USE1Q9NZ43 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USE1Q9NZ43 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USE1Q9NZ43 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
USE1Q9NZ43 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.46■□□□□ 0.71
USE1Q9NZ43 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
USE1Q9NZ43 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
USE1Q9NZ43 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
USE1Q9NZ43 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
USE1Q9NZ43 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.46■□□□□ 0.71
USE1Q9NZ43 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.45■□□□□ 0.7
USE1Q9NZ43 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
USE1Q9NZ43 PLK5-205ENST00000642079 1969 ntBASIC19.45■□□□□ 0.7
USE1Q9NZ43 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms