Protein–RNA interactions for Protein: Q9NY59

SMPD3, Sphingomyelin phosphodiesterase 3, humanhuman

Predicted RBP Predictions only

Length 655 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3Q9NY59 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMPD3Q9NY59 VGF-203ENST00000611537 1622 ntTSL 5 BASIC19.47■□□□□ 0.71
SMPD3Q9NY59 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMPD3Q9NY59 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMPD3Q9NY59 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMPD3Q9NY59 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMPD3Q9NY59 AL020996.1-203ENST00000536896 2307 ntBASIC19.46■□□□□ 0.71
SMPD3Q9NY59 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 RARRES2P2-201ENST00000394842 485 ntBASIC19.45■□□□□ 0.7
SMPD3Q9NY59 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.45■□□□□ 0.7
SMPD3Q9NY59 AC020907.5-201ENST00000624372 1936 ntBASIC19.45■□□□□ 0.7
SMPD3Q9NY59 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMPD3Q9NY59 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 AC137630.3-201ENST00000607245 391 ntBASIC19.43■□□□□ 0.7
SMPD3Q9NY59 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.43■□□□□ 0.7
SMPD3Q9NY59 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 AC003102.1-202ENST00000563394 1796 ntBASIC19.42■□□□□ 0.7
SMPD3Q9NY59 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SMPD3Q9NY59 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.41■□□□□ 0.7
SMPD3Q9NY59 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMPD3Q9NY59 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC19.41■□□□□ 0.7
SMPD3Q9NY59 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SMPD3Q9NY59 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.41■□□□□ 0.7
SMPD3Q9NY59 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms