Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 RNA5SP413-201ENST00000516373 109 ntBASIC20.54■□□□□ 0.88
LMX1AQ8TE12 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
LMX1AQ8TE12 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 AL162412.1-201ENST00000567129 965 ntBASIC20.53■□□□□ 0.88
LMX1AQ8TE12 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 AC092118.2-201ENST00000613495 667 ntBASIC20.53■□□□□ 0.88
LMX1AQ8TE12 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LMX1AQ8TE12 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 RARRES2P4-201ENST00000514074 484 ntBASIC20.52■□□□□ 0.88
LMX1AQ8TE12 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LMX1AQ8TE12 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
LMX1AQ8TE12 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
LMX1AQ8TE12 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 AC010542.4-201ENST00000563151 1910 ntBASIC20.51■□□□□ 0.87
LMX1AQ8TE12 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
LMX1AQ8TE12 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 AC010980.2-201ENST00000587099 1412 ntBASIC20.5■□□□□ 0.87
LMX1AQ8TE12 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LMX1AQ8TE12 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LMX1AQ8TE12 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 AC245052.3-201ENST00000450182 901 ntBASIC20.48■□□□□ 0.87
LMX1AQ8TE12 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 FAM99A-202ENST00000538190 1989 ntBASIC20.48■□□□□ 0.87
LMX1AQ8TE12 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
LMX1AQ8TE12 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
LMX1AQ8TE12 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms