Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.36■□□□□ 0.85
HNF4AP41235 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HNF4AP41235 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HNF4AP41235 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.35■□□□□ 0.85
HNF4AP41235 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.35■□□□□ 0.85
HNF4AP41235 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.35■□□□□ 0.85
HNF4AP41235 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HNF4AP41235 TPRG1LP1-201ENST00000598702 760 ntBASIC20.35■□□□□ 0.85
HNF4AP41235 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.35■□□□□ 0.85
HNF4AP41235 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HNF4AP41235 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.35■□□□□ 0.85
HNF4AP41235 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.35■□□□□ 0.85
HNF4AP41235 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.34■□□□□ 0.85
HNF4AP41235 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.34■□□□□ 0.85
HNF4AP41235 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.34■□□□□ 0.85
HNF4AP41235 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.34■□□□□ 0.85
HNF4AP41235 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.34■□□□□ 0.85
HNF4AP41235 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.34■□□□□ 0.85
HNF4AP41235 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
HNF4AP41235 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HNF4AP41235 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.34■□□□□ 0.85
HNF4AP41235 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HNF4AP41235 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HNF4AP41235 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.34■□□□□ 0.85
HNF4AP41235 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.34■□□□□ 0.85
HNF4AP41235 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.34■□□□□ 0.85
HNF4AP41235 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
HNF4AP41235 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HNF4AP41235 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.33■□□□□ 0.85
HNF4AP41235 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
HNF4AP41235 YBX1P1-201ENST00000445822 960 ntBASIC20.33■□□□□ 0.85
HNF4AP41235 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.33■□□□□ 0.85
HNF4AP41235 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.33■□□□□ 0.84
HNF4AP41235 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HNF4AP41235 LINC02228-203ENST00000641970 1355 ntBASIC20.33■□□□□ 0.84
HNF4AP41235 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 AC005229.4-201ENST00000610085 2198 ntBASIC20.32■□□□□ 0.84
HNF4AP41235 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.32■□□□□ 0.84
HNF4AP41235 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.32■□□□□ 0.84
HNF4AP41235 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
HNF4AP41235 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HNF4AP41235 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.31■□□□□ 0.84
HNF4AP41235 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
HNF4AP41235 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.31■□□□□ 0.84
HNF4AP41235 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.31■□□□□ 0.84
HNF4AP41235 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
HNF4AP41235 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
HNF4AP41235 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
HNF4AP41235 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 SLC25A24-204ENST00000569674 2357 ntBASIC20.3■□□□□ 0.84
HNF4AP41235 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
HNF4AP41235 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.3■□□□□ 0.84
HNF4AP41235 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
HNF4AP41235 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.3■□□□□ 0.84
HNF4AP41235 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
HNF4AP41235 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.3■□□□□ 0.84
HNF4AP41235 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.3■□□□□ 0.84
HNF4AP41235 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.3■□□□□ 0.84
HNF4AP41235 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms