Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH3P22223 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 AC006015.1-201ENST00000429970 570 ntBASIC20.51■□□□□ 0.87
CDH3P22223 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH3P22223 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.51■□□□□ 0.87
CDH3P22223 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH3P22223 RARRES2P11-201ENST00000635158 484 ntBASIC20.51■□□□□ 0.87
CDH3P22223 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CDH3P22223 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.51■□□□□ 0.87
CDH3P22223 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CDH3P22223 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH3P22223 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.51■□□□□ 0.87
CDH3P22223 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 AC073130.3-201ENST00000624389 2278 ntBASIC20.51■□□□□ 0.87
CDH3P22223 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDH3P22223 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH3P22223 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH3P22223 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH3P22223 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDH3P22223 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC20.5■□□□□ 0.87
CDH3P22223 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
CDH3P22223 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDH3P22223 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.5■□□□□ 0.87
CDH3P22223 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
CDH3P22223 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 AC092053.2-201ENST00000640557 1818 ntBASIC20.49■□□□□ 0.87
CDH3P22223 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 KRT18P11-201ENST00000435214 1283 ntBASIC20.49■□□□□ 0.87
CDH3P22223 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.49■□□□□ 0.87
CDH3P22223 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.49■□□□□ 0.87
CDH3P22223 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CDH3P22223 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH3P22223 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH3P22223 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CDH3P22223 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.48■□□□□ 0.87
CDH3P22223 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH3P22223 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CDH3P22223 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH3P22223 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 AC090192.1-201ENST00000517740 490 ntBASIC20.48■□□□□ 0.87
CDH3P22223 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.48■□□□□ 0.87
CDH3P22223 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.48■□□□□ 0.87
CDH3P22223 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH3P22223 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
CDH3P22223 GUSBP5-202ENST00000510805 1989 ntBASIC20.48■□□□□ 0.87
CDH3P22223 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.48■□□□□ 0.87
CDH3P22223 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDH3P22223 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CDH3P22223 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH3P22223 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
CDH3P22223 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.47■□□□□ 0.87
CDH3P22223 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.47■□□□□ 0.87
CDH3P22223 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDH3P22223 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.47■□□□□ 0.87
CDH3P22223 AP001160.3-201ENST00000601484 763 ntBASIC20.47■□□□□ 0.87
CDH3P22223 BID-214ENST00000617586 542 ntTSL 5 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms