Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC25.52■■□□□ 1.68
COL1A1P02452 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC25.52■■□□□ 1.68
COL1A1P02452 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC25.52■■□□□ 1.68
COL1A1P02452 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC25.52■■□□□ 1.68
COL1A1P02452 AC243732.1-201ENST00000612648 864 ntBASIC25.52■■□□□ 1.68
COL1A1P02452 AC092118.2-201ENST00000613495 667 ntBASIC25.52■■□□□ 1.68
COL1A1P02452 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC25.52■■□□□ 1.68
COL1A1P02452 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL1A1P02452 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.68
COL1A1P02452 GUSBP5-202ENST00000510805 1989 ntBASIC25.51■■□□□ 1.67
COL1A1P02452 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL1A1P02452 MKRN4P-201ENST00000444706 1521 ntBASIC25.51■■□□□ 1.67
COL1A1P02452 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL1A1P02452 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL1A1P02452 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL1A1P02452 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC25.51■■□□□ 1.67
COL1A1P02452 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
COL1A1P02452 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL1A1P02452 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC25.51■■□□□ 1.67
COL1A1P02452 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL1A1P02452 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC25.5■■□□□ 1.67
COL1A1P02452 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL1A1P02452 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC25.5■■□□□ 1.67
COL1A1P02452 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL1A1P02452 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC25.5■■□□□ 1.67
COL1A1P02452 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC25.5■■□□□ 1.67
COL1A1P02452 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
COL1A1P02452 AC120498.10-201ENST00000621827 505 ntBASIC25.5■■□□□ 1.67
COL1A1P02452 OR10C1-204ENST00000622521 1039 ntBASIC25.5■■□□□ 1.67
COL1A1P02452 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC25.5■■□□□ 1.67
COL1A1P02452 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
COL1A1P02452 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.5■■□□□ 1.67
COL1A1P02452 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL1A1P02452 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
COL1A1P02452 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC25.49■■□□□ 1.67
COL1A1P02452 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC25.49■■□□□ 1.67
COL1A1P02452 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL1A1P02452 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC25.49■■□□□ 1.67
COL1A1P02452 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC25.49■■□□□ 1.67
COL1A1P02452 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC25.49■■□□□ 1.67
COL1A1P02452 MIPEPP3-201ENST00000412105 444 ntBASIC25.49■■□□□ 1.67
COL1A1P02452 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL1A1P02452 PPP1R14BP2-201ENST00000426284 444 ntBASIC25.49■■□□□ 1.67
COL1A1P02452 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC25.49■■□□□ 1.67
COL1A1P02452 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC25.49■■□□□ 1.67
COL1A1P02452 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC25.49■■□□□ 1.67
COL1A1P02452 AC242852.2-201ENST00000615738 1807 ntBASIC25.49■■□□□ 1.67
COL1A1P02452 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL1A1P02452 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC25.49■■□□□ 1.67
COL1A1P02452 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
COL1A1P02452 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
COL1A1P02452 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.49■■□□□ 1.67
COL1A1P02452 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL1A1P02452 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC25.48■■□□□ 1.67
COL1A1P02452 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC25.48■■□□□ 1.67
COL1A1P02452 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC25.48■■□□□ 1.67
COL1A1P02452 RNA5SP413-201ENST00000516373 109 ntBASIC25.48■■□□□ 1.67
COL1A1P02452 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC25.48■■□□□ 1.67
COL1A1P02452 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
COL1A1P02452 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL1A1P02452 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
COL1A1P02452 AC233723.2-201ENST00000623798 2106 ntBASIC25.48■■□□□ 1.67
COL1A1P02452 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC25.47■■□□□ 1.67
COL1A1P02452 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC25.47■■□□□ 1.67
COL1A1P02452 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
COL1A1P02452 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
COL1A1P02452 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC25.47■■□□□ 1.67
COL1A1P02452 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
COL1A1P02452 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
COL1A1P02452 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC25.46■■□□□ 1.67
COL1A1P02452 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL1A1P02452 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL1A1P02452 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL1A1P02452 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
COL1A1P02452 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
COL1A1P02452 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC25.46■■□□□ 1.67
COL1A1P02452 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC25.46■■□□□ 1.67
COL1A1P02452 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
COL1A1P02452 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
COL1A1P02452 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC25.45■■□□□ 1.67
COL1A1P02452 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.67
COL1A1P02452 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
COL1A1P02452 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL1A1P02452 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL1A1P02452 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC25.45■■□□□ 1.66
COL1A1P02452 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL1A1P02452 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
COL1A1P02452 KRT18P29-201ENST00000397031 1267 ntBASIC25.45■■□□□ 1.66
COL1A1P02452 CD44-222ENST00000526025 1052 ntTSL 2 BASIC25.45■■□□□ 1.66
COL1A1P02452 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms