Protein–RNA interactions for Protein: O95292

VAPB, Vesicle-associated membrane protein-associated protein B/C, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPBO95292 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.11■□□□□ 0.97
VAPBO95292 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VAPBO95292 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VAPBO95292 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VAPBO95292 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VAPBO95292 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.1■□□□□ 0.97
VAPBO95292 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.1■□□□□ 0.97
VAPBO95292 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.1■□□□□ 0.97
VAPBO95292 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.1■□□□□ 0.97
VAPBO95292 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.1■□□□□ 0.97
VAPBO95292 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.1■□□□□ 0.97
VAPBO95292 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 AL049796.1-201ENST00000565336 1766 ntBASIC21.1■□□□□ 0.97
VAPBO95292 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VAPBO95292 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.1■□□□□ 0.97
VAPBO95292 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.09■□□□□ 0.97
VAPBO95292 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.09■□□□□ 0.97
VAPBO95292 MIR638-201ENST00000385237 100 ntBASIC21.09■□□□□ 0.97
VAPBO95292 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.09■□□□□ 0.97
VAPBO95292 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.09■□□□□ 0.97
VAPBO95292 AC105265.2-201ENST00000467189 838 ntBASIC21.09■□□□□ 0.97
VAPBO95292 MIR6084-201ENST00000622012 110 ntBASIC21.09■□□□□ 0.97
VAPBO95292 AL358852.1-201ENST00000623174 1268 ntBASIC21.09■□□□□ 0.97
VAPBO95292 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VAPBO95292 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VAPBO95292 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
VAPBO95292 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VAPBO95292 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VAPBO95292 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
VAPBO95292 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VAPBO95292 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.08■□□□□ 0.97
VAPBO95292 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VAPBO95292 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.08■□□□□ 0.97
VAPBO95292 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.08■□□□□ 0.97
VAPBO95292 TPRG1LP1-201ENST00000598702 760 ntBASIC21.08■□□□□ 0.97
VAPBO95292 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VAPBO95292 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.08■□□□□ 0.97
VAPBO95292 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.08■□□□□ 0.96
VAPBO95292 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
VAPBO95292 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
VAPBO95292 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.07■□□□□ 0.96
VAPBO95292 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.07■□□□□ 0.96
VAPBO95292 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.07■□□□□ 0.96
VAPBO95292 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VAPBO95292 IRS3P-201ENST00000223076 1006 ntBASIC21.07■□□□□ 0.96
VAPBO95292 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.07■□□□□ 0.96
VAPBO95292 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.07■□□□□ 0.96
VAPBO95292 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.07■□□□□ 0.96
VAPBO95292 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.07■□□□□ 0.96
VAPBO95292 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.07■□□□□ 0.96
VAPBO95292 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.07■□□□□ 0.96
VAPBO95292 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VAPBO95292 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
VAPBO95292 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
VAPBO95292 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.06■□□□□ 0.96
VAPBO95292 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
VAPBO95292 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VAPBO95292 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.06■□□□□ 0.96
VAPBO95292 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.06■□□□□ 0.96
VAPBO95292 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VAPBO95292 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VAPBO95292 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
VAPBO95292 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
VAPBO95292 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
VAPBO95292 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.05■□□□□ 0.96
VAPBO95292 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.05■□□□□ 0.96
VAPBO95292 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VAPBO95292 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms