Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 AL136967.2-201ENST00000623968 743 ntBASIC18.8■□□□□ 0.6
VSX1Q9NZR4 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VSX1Q9NZR4 BX005040.4-201ENST00000637145 1518 ntBASIC18.79■□□□□ 0.6
VSX1Q9NZR4 AC005224.4-201ENST00000583262 1652 ntBASIC18.79■□□□□ 0.6
VSX1Q9NZR4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 AL049796.1-201ENST00000565336 1766 ntBASIC18.79■□□□□ 0.6
VSX1Q9NZR4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.79■□□□□ 0.6
VSX1Q9NZR4 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 NALT1-201ENST00000429224 738 ntTSL 5 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.78■□□□□ 0.6
VSX1Q9NZR4 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VSX1Q9NZR4 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC18.77■□□□□ 0.6
VSX1Q9NZR4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VSX1Q9NZR4 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VSX1Q9NZR4 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 EBPL-204ENST00000378272 766 ntTSL 3 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 SUDS3P1-201ENST00000505831 966 ntBASIC18.76■□□□□ 0.59
VSX1Q9NZR4 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.76■□□□□ 0.59
VSX1Q9NZR4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.76■□□□□ 0.59
VSX1Q9NZR4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.75■□□□□ 0.59
VSX1Q9NZR4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.74■□□□□ 0.59
VSX1Q9NZR4 AC012414.1-201ENST00000556676 535 ntBASIC18.74■□□□□ 0.59
VSX1Q9NZR4 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms