Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.06■■□□□ 1.6
DDX4Q9NQI0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 TBCB-214ENST00000629269 413 ntTSL 5 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 AC008694.1-202ENST00000636953 945 ntBASIC25.05■■□□□ 1.6
DDX4Q9NQI0 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC25.05■■□□□ 1.6
DDX4Q9NQI0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 BX276092.2-201ENST00000417668 665 ntBASIC25.04■■□□□ 1.6
DDX4Q9NQI0 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 AL591742.1-201ENST00000604433 565 ntBASIC25.04■■□□□ 1.6
DDX4Q9NQI0 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
DDX4Q9NQI0 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
DDX4Q9NQI0 AC092118.2-201ENST00000613495 667 ntBASIC25.03■■□□□ 1.6
DDX4Q9NQI0 FAM99A-202ENST00000538190 1989 ntBASIC25.03■■□□□ 1.6
DDX4Q9NQI0 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 RARRES2P4-201ENST00000514074 484 ntBASIC25.02■■□□□ 1.6
DDX4Q9NQI0 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 AL162412.1-201ENST00000567129 965 ntBASIC25.02■■□□□ 1.6
DDX4Q9NQI0 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 AC010980.2-201ENST00000587099 1412 ntBASIC25.02■■□□□ 1.6
DDX4Q9NQI0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC25.02■■□□□ 1.6
DDX4Q9NQI0 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 C11orf96-202ENST00000528572 1834 ntBASIC25.01■■□□□ 1.59
DDX4Q9NQI0 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 AC083880.1-201ENST00000608266 535 ntBASIC25.01■■□□□ 1.59
DDX4Q9NQI0 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
DDX4Q9NQI0 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC25■■□□□ 1.59
DDX4Q9NQI0 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC25■■□□□ 1.59
DDX4Q9NQI0 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC25■■□□□ 1.59
DDX4Q9NQI0 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
DDX4Q9NQI0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC25■■□□□ 1.59
DDX4Q9NQI0 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC25■■□□□ 1.59
DDX4Q9NQI0 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
DDX4Q9NQI0 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
DDX4Q9NQI0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 AC068473.5-201ENST00000616428 2072 ntBASIC24.99■■□□□ 1.59
DDX4Q9NQI0 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC24.99■■□□□ 1.59
DDX4Q9NQI0 MYC-209ENST00000641252 345 ntBASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms