Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 RAP2CP1-201ENST00000605103 478 ntBASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 AC139530.1-201ENST00000575312 1977 ntBASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CLIP3Q96DZ5 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CLIP3Q96DZ5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 MFSD11-216ENST00000590393 1141 ntBASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CLIP3Q96DZ5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 AC138907.5-202ENST00000569484 235 ntBASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
CLIP3Q96DZ5 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 AC233723.2-201ENST00000623798 2106 ntBASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 AC010141.2-201ENST00000452426 721 ntBASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 MYCNOS-205ENST00000641950 531 ntBASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CLIP3Q96DZ5 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
CLIP3Q96DZ5 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms