Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
DEPDC4Q8N2C3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
DEPDC4Q8N2C3 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
DEPDC4Q8N2C3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 LINC01006-201ENST00000333319 2292 ntBASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.48■□□□□ 0.71
DEPDC4Q8N2C3 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 AC079089.2-201ENST00000531211 1277 ntBASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 AC011298.3-201ENST00000615796 283 ntBASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.47■□□□□ 0.71
DEPDC4Q8N2C3 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 SERBP1P1-201ENST00000396021 1160 ntBASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
DEPDC4Q8N2C3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms