Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A5P29400 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC25.66■■□□□ 1.7
COL4A5P29400 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A5P29400 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
COL4A5P29400 RARG-204ENST00000543726 1779 ntTSL 2 BASIC25.65■■□□□ 1.7
COL4A5P29400 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.65■■□□□ 1.7
COL4A5P29400 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 LSM12P1-201ENST00000411836 588 ntBASIC25.65■■□□□ 1.7
COL4A5P29400 ECEL1P3-201ENST00000427961 737 ntBASIC25.65■■□□□ 1.7
COL4A5P29400 PBX1-209ENST00000485769 834 ntTSL 2 BASIC25.65■■□□□ 1.7
COL4A5P29400 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC25.65■■□□□ 1.7
COL4A5P29400 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.65■■□□□ 1.7
COL4A5P29400 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
COL4A5P29400 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC25.65■■□□□ 1.7
COL4A5P29400 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC25.64■■□□□ 1.7
COL4A5P29400 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A5P29400 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.7
COL4A5P29400 RPPH1-201ENST00000516869 333 ntBASIC25.64■■□□□ 1.7
COL4A5P29400 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A5P29400 AC087742.1-201ENST00000575880 1738 ntBASIC25.64■■□□□ 1.7
COL4A5P29400 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A5P29400 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A5P29400 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC25.64■■□□□ 1.7
COL4A5P29400 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC25.64■■□□□ 1.7
COL4A5P29400 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
COL4A5P29400 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.64■■□□□ 1.69
COL4A5P29400 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC25.64■■□□□ 1.69
COL4A5P29400 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
COL4A5P29400 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.69
COL4A5P29400 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC25.64■■□□□ 1.69
COL4A5P29400 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.69
COL4A5P29400 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A5P29400 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.63■■□□□ 1.69
COL4A5P29400 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A5P29400 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL4A5P29400 AC091799.1-201ENST00000422823 811 ntBASIC25.63■■□□□ 1.69
COL4A5P29400 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC25.63■■□□□ 1.69
COL4A5P29400 CYP2T3P-201ENST00000601990 817 ntBASIC25.63■■□□□ 1.69
COL4A5P29400 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A5P29400 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A5P29400 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A5P29400 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A5P29400 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
COL4A5P29400 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A5P29400 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC25.62■■□□□ 1.69
COL4A5P29400 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.62■■□□□ 1.69
COL4A5P29400 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
COL4A5P29400 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.62■■□□□ 1.69
COL4A5P29400 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
COL4A5P29400 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A5P29400 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC25.61■■□□□ 1.69
COL4A5P29400 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A5P29400 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
COL4A5P29400 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A5P29400 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC25.61■■□□□ 1.69
COL4A5P29400 KLF2-202ENST00000592003 564 ntTSL 3 BASIC25.61■■□□□ 1.69
COL4A5P29400 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.61■■□□□ 1.69
COL4A5P29400 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A5P29400 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A5P29400 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
COL4A5P29400 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC25.61■■□□□ 1.69
COL4A5P29400 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC25.61■■□□□ 1.69
COL4A5P29400 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC25.61■■□□□ 1.69
COL4A5P29400 C1QBPP2-201ENST00000528754 825 ntBASIC25.61■■□□□ 1.69
COL4A5P29400 PNMA6B-201ENST00000538162 1200 ntBASIC25.61■■□□□ 1.69
COL4A5P29400 Z99916.2-201ENST00000604037 246 ntBASIC25.61■■□□□ 1.69
COL4A5P29400 AC073912.3-201ENST00000624414 853 ntBASIC25.61■■□□□ 1.69
COL4A5P29400 HLA-B-256ENST00000639848 1089 ntBASIC25.61■■□□□ 1.69
COL4A5P29400 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
COL4A5P29400 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC25.6■■□□□ 1.69
COL4A5P29400 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC25.6■■□□□ 1.69
COL4A5P29400 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
COL4A5P29400 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC25.6■■□□□ 1.69
COL4A5P29400 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
COL4A5P29400 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC25.59■■□□□ 1.69
COL4A5P29400 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC25.59■■□□□ 1.69
COL4A5P29400 GXYLT1P3-201ENST00000453058 1193 ntBASIC25.59■■□□□ 1.69
COL4A5P29400 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC25.59■■□□□ 1.69
COL4A5P29400 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC25.59■■□□□ 1.69
COL4A5P29400 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A5P29400 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A5P29400 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
COL4A5P29400 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
COL4A5P29400 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL4A5P29400 SNORA78-201ENST00000459373 127 ntBASIC25.58■■□□□ 1.69
COL4A5P29400 SLC29A4P2-201ENST00000504749 1089 ntBASIC25.58■■□□□ 1.69
COL4A5P29400 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 62.4 ms