Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH3P20585 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.97■□□□□ 0.95
MSH3P20585 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MSH3P20585 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.97■□□□□ 0.95
MSH3P20585 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH3P20585 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC20.97■□□□□ 0.95
MSH3P20585 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.97■□□□□ 0.95
MSH3P20585 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
MSH3P20585 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH3P20585 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
MSH3P20585 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 AC004854.2-201ENST00000608450 1441 ntBASIC20.96■□□□□ 0.95
MSH3P20585 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.96■□□□□ 0.95
MSH3P20585 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
MSH3P20585 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.96■□□□□ 0.95
MSH3P20585 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.96■□□□□ 0.95
MSH3P20585 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.96■□□□□ 0.95
MSH3P20585 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.96■□□□□ 0.95
MSH3P20585 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
MSH3P20585 AC007375.3-201ENST00000600936 2314 ntBASIC20.96■□□□□ 0.95
MSH3P20585 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.96■□□□□ 0.95
MSH3P20585 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MSH3P20585 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH3P20585 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.95
MSH3P20585 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
MSH3P20585 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
MSH3P20585 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH3P20585 AP004607.4-201ENST00000530158 1459 ntBASIC20.95■□□□□ 0.94
MSH3P20585 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH3P20585 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH3P20585 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
MSH3P20585 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
MSH3P20585 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.95■□□□□ 0.94
MSH3P20585 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.95■□□□□ 0.94
MSH3P20585 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH3P20585 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH3P20585 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH3P20585 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH3P20585 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC20.95■□□□□ 0.94
MSH3P20585 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
MSH3P20585 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH3P20585 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH3P20585 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.94■□□□□ 0.94
MSH3P20585 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH3P20585 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH3P20585 AL162430.1-201ENST00000480705 870 ntBASIC20.94■□□□□ 0.94
MSH3P20585 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.94■□□□□ 0.94
MSH3P20585 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.94■□□□□ 0.94
MSH3P20585 EEF1DP3-203ENST00000566025 782 ntBASIC20.94■□□□□ 0.94
MSH3P20585 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.94■□□□□ 0.94
MSH3P20585 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH3P20585 AC053503.5-201ENST00000601508 636 ntBASIC20.94■□□□□ 0.94
MSH3P20585 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.94■□□□□ 0.94
MSH3P20585 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
MSH3P20585 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.93■□□□□ 0.94
MSH3P20585 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 KRT18P5-201ENST00000436075 1291 ntBASIC20.93■□□□□ 0.94
MSH3P20585 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH3P20585 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC20.93■□□□□ 0.94
MSH3P20585 AC104187.1-201ENST00000607510 612 ntBASIC20.93■□□□□ 0.94
MSH3P20585 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.93■□□□□ 0.94
MSH3P20585 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
MSH3P20585 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.93■□□□□ 0.94
MSH3P20585 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
MSH3P20585 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
MSH3P20585 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
MSH3P20585 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
MSH3P20585 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH3P20585 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
MSH3P20585 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.92■□□□□ 0.94
MSH3P20585 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH3P20585 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.92■□□□□ 0.94
MSH3P20585 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH3P20585 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.92■□□□□ 0.94
MSH3P20585 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.92■□□□□ 0.94
MSH3P20585 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
MSH3P20585 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MSH3P20585 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms