Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL1P09341 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL1P09341 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL1P09341 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL1P09341 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.33■□□□□ 0.2
CXCL1P09341 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL1P09341 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CXCL1P09341 AC116562.4-201ENST00000641316 2276 ntBASIC16.33■□□□□ 0.2
CXCL1P09341 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC16.32■□□□□ 0.2
CXCL1P09341 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC16.32■□□□□ 0.2
CXCL1P09341 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.32■□□□□ 0.2
CXCL1P09341 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.32■□□□□ 0.2
CXCL1P09341 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC16.32■□□□□ 0.2
CXCL1P09341 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CXCL1P09341 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CXCL1P09341 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.31■□□□□ 0.2
CXCL1P09341 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CXCL1P09341 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CXCL1P09341 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.31■□□□□ 0.2
CXCL1P09341 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CXCL1P09341 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 AC005082.1-201ENST00000413042 2259 ntBASIC16.31■□□□□ 0.2
CXCL1P09341 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CXCL1P09341 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CXCL1P09341 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.3■□□□□ 0.2
CXCL1P09341 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 AC112907.3-201ENST00000577781 2400 ntBASIC16.3■□□□□ 0.2
CXCL1P09341 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC16.3■□□□□ 0.2
CXCL1P09341 OXCT2P1-201ENST00000447263 1535 ntBASIC16.3■□□□□ 0.2
CXCL1P09341 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CXCL1P09341 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC16.3■□□□□ 0.2
CXCL1P09341 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.3■□□□□ 0.2
CXCL1P09341 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.3■□□□□ 0.2
CXCL1P09341 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CXCL1P09341 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.3■□□□□ 0.2
CXCL1P09341 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CXCL1P09341 NEFHP1-201ENST00000412845 2629 ntBASIC16.3■□□□□ 0.2
CXCL1P09341 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CXCL1P09341 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.29■□□□□ 0.2
CXCL1P09341 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.29■□□□□ 0.2
CXCL1P09341 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CXCL1P09341 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC16.29■□□□□ 0.2
CXCL1P09341 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.29■□□□□ 0.2
CXCL1P09341 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 AF131216.4-201ENST00000638924 1588 ntBASIC16.29■□□□□ 0.2
CXCL1P09341 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CXCL1P09341 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CXCL1P09341 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CXCL1P09341 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CXCL1P09341 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL1P09341 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC16.28■□□□□ 0.2
CXCL1P09341 AC129492.7-201ENST00000622992 756 ntBASIC16.28■□□□□ 0.2
CXCL1P09341 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CXCL1P09341 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms