Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV1-2A0A0B4J238 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
TRAV1-2A0A0B4J238 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC18.35■□□□□ 0.53
TRAV1-2A0A0B4J238 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
TRAV1-2A0A0B4J238 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
TRAV1-2A0A0B4J238 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.33■□□□□ 0.53
TRAV1-2A0A0B4J238 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 OR2I1P-207ENST00000453522 948 ntBASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 KRT125P-201ENST00000546827 989 ntBASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 AC010997.5-201ENST00000609182 354 ntBASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
TRAV1-2A0A0B4J238 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 AC012354.3-201ENST00000623734 483 ntBASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRAV1-2A0A0B4J238 AP004607.7-201ENST00000527152 1677 ntBASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRAV1-2A0A0B4J238 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 AC027702.1-201ENST00000563810 1770 ntBASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 AC020907.5-201ENST00000624372 1936 ntBASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 AC006455.2-201ENST00000429931 906 ntBASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRAV1-2A0A0B4J238 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms