Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 MIR4758-201ENST00000577688 71 ntBASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
NOTCH3Q9UM47 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 LTK-203ENST00000453182 2412 ntTSL 2 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC16.22■□□□□ 0.19
NOTCH3Q9UM47 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 COMT-203ENST00000403184 2217 ntTSL 2 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 AC016405.3-201ENST00000607710 860 ntBASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
NOTCH3Q9UM47 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
NOTCH3Q9UM47 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 UQCRFS1P1-201ENST00000435169 820 ntBASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC16.2■□□□□ 0.18
NOTCH3Q9UM47 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 MARS-234ENST00000630571 216 ntTSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 MARS-235ENST00000630803 183 ntTSL 3 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
NOTCH3Q9UM47 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms