Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DDX56Q9NY93 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
DDX56Q9NY93 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.02■■□□□ 1.11
DDX56Q9NY93 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
DDX56Q9NY93 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 AC091305.1-201ENST00000479476 895 ntBASIC22.01■■□□□ 1.11
DDX56Q9NY93 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 AF213884.3-201ENST00000563833 479 ntBASIC22.01■■□□□ 1.11
DDX56Q9NY93 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
DDX56Q9NY93 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
DDX56Q9NY93 BX005040.4-201ENST00000637145 1518 ntBASIC22.01■■□□□ 1.11
DDX56Q9NY93 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
DDX56Q9NY93 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
DDX56Q9NY93 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22■■□□□ 1.11
DDX56Q9NY93 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
DDX56Q9NY93 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
DDX56Q9NY93 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22■■□□□ 1.11
DDX56Q9NY93 AL049796.1-201ENST00000565336 1766 ntBASIC22■■□□□ 1.11
DDX56Q9NY93 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC22■■□□□ 1.11
DDX56Q9NY93 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC22■■□□□ 1.11
DDX56Q9NY93 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
DDX56Q9NY93 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC22■■□□□ 1.11
DDX56Q9NY93 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
DDX56Q9NY93 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22■■□□□ 1.11
DDX56Q9NY93 AC005224.4-201ENST00000583262 1652 ntBASIC22■■□□□ 1.11
DDX56Q9NY93 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22■■□□□ 1.11
DDX56Q9NY93 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC22■■□□□ 1.11
DDX56Q9NY93 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
DDX56Q9NY93 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.99■■□□□ 1.11
DDX56Q9NY93 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DDX56Q9NY93 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
DDX56Q9NY93 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
DDX56Q9NY93 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.99■■□□□ 1.11
DDX56Q9NY93 AL136967.2-201ENST00000623968 743 ntBASIC21.99■■□□□ 1.11
DDX56Q9NY93 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DDX56Q9NY93 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DDX56Q9NY93 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.99■■□□□ 1.11
DDX56Q9NY93 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
DDX56Q9NY93 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 AL031432.3-201ENST00000607698 485 ntBASIC21.98■■□□□ 1.11
DDX56Q9NY93 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
DDX56Q9NY93 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.98■■□□□ 1.11
DDX56Q9NY93 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DDX56Q9NY93 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.97■■□□□ 1.11
DDX56Q9NY93 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.97■■□□□ 1.11
DDX56Q9NY93 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
DDX56Q9NY93 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX56Q9NY93 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.97■■□□□ 1.11
DDX56Q9NY93 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX56Q9NY93 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
DDX56Q9NY93 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
DDX56Q9NY93 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.97■■□□□ 1.11
DDX56Q9NY93 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
DDX56Q9NY93 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
DDX56Q9NY93 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX56Q9NY93 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX56Q9NY93 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX56Q9NY93 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.96■■□□□ 1.11
DDX56Q9NY93 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.96■■□□□ 1.11
DDX56Q9NY93 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
DDX56Q9NY93 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
DDX56Q9NY93 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
DDX56Q9NY93 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX56Q9NY93 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
DDX56Q9NY93 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX56Q9NY93 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.95■■□□□ 1.1
DDX56Q9NY93 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.95■■□□□ 1.1
DDX56Q9NY93 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
DDX56Q9NY93 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
DDX56Q9NY93 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
DDX56Q9NY93 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.94■■□□□ 1.1
DDX56Q9NY93 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
DDX56Q9NY93 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms