Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NPAS1Q99742 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS1Q99742 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS1Q99742 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS1Q99742 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.27■□□□□ 0.68
NPAS1Q99742 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
NPAS1Q99742 AC034268.1-201ENST00000441047 882 ntBASIC19.27■□□□□ 0.68
NPAS1Q99742 AC079140.4-201ENST00000507448 529 ntBASIC19.27■□□□□ 0.68
NPAS1Q99742 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS1Q99742 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.27■□□□□ 0.68
NPAS1Q99742 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
NPAS1Q99742 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS1Q99742 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS1Q99742 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS1Q99742 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS1Q99742 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS1Q99742 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
NPAS1Q99742 AC004854.2-201ENST00000608450 1441 ntBASIC19.26■□□□□ 0.67
NPAS1Q99742 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19.26■□□□□ 0.67
NPAS1Q99742 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
NPAS1Q99742 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.26■□□□□ 0.67
NPAS1Q99742 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NPAS1Q99742 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.26■□□□□ 0.67
NPAS1Q99742 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.26■□□□□ 0.67
NPAS1Q99742 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.25■□□□□ 0.67
NPAS1Q99742 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
NPAS1Q99742 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.25■□□□□ 0.67
NPAS1Q99742 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 AP004607.4-201ENST00000530158 1459 ntBASIC19.25■□□□□ 0.67
NPAS1Q99742 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
NPAS1Q99742 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.25■□□□□ 0.67
NPAS1Q99742 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.25■□□□□ 0.67
NPAS1Q99742 KRT18P5-201ENST00000436075 1291 ntBASIC19.25■□□□□ 0.67
NPAS1Q99742 AL162430.1-201ENST00000480705 870 ntBASIC19.25■□□□□ 0.67
NPAS1Q99742 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC19.25■□□□□ 0.67
NPAS1Q99742 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
NPAS1Q99742 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.25■□□□□ 0.67
NPAS1Q99742 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.25■□□□□ 0.67
NPAS1Q99742 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.25■□□□□ 0.67
NPAS1Q99742 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NPAS1Q99742 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.25■□□□□ 0.67
NPAS1Q99742 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.24■□□□□ 0.67
NPAS1Q99742 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.24■□□□□ 0.67
NPAS1Q99742 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.24■□□□□ 0.67
NPAS1Q99742 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.24■□□□□ 0.67
NPAS1Q99742 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.24■□□□□ 0.67
NPAS1Q99742 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.24■□□□□ 0.67
NPAS1Q99742 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.24■□□□□ 0.67
NPAS1Q99742 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.24■□□□□ 0.67
NPAS1Q99742 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.24■□□□□ 0.67
NPAS1Q99742 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NPAS1Q99742 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.23■□□□□ 0.67
NPAS1Q99742 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.23■□□□□ 0.67
NPAS1Q99742 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.23■□□□□ 0.67
NPAS1Q99742 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.23■□□□□ 0.67
NPAS1Q99742 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.23■□□□□ 0.67
NPAS1Q99742 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.23■□□□□ 0.67
NPAS1Q99742 NTF6G-201ENST00000591094 616 ntBASIC19.23■□□□□ 0.67
NPAS1Q99742 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.23■□□□□ 0.67
NPAS1Q99742 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.23■□□□□ 0.67
NPAS1Q99742 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.23■□□□□ 0.67
NPAS1Q99742 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
NPAS1Q99742 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.23■□□□□ 0.67
NPAS1Q99742 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NPAS1Q99742 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.22■□□□□ 0.67
NPAS1Q99742 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms