Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 BX842568.3-201ENST00000418104 571 ntBASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLIP4Q8N3C7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 AP004607.7-201ENST00000527152 1677 ntBASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLIP4Q8N3C7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 AC008406.3-201ENST00000620001 1374 ntBASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLIP4Q8N3C7 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 AC233992.3-201ENST00000607491 485 ntBASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 AC135279.3-201ENST00000610945 1311 ntBASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CLIP4Q8N3C7 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 AC133561.4-201ENST00000566112 224 ntBASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 AF106564.1-201ENST00000607058 2553 ntBASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CLIP4Q8N3C7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 AC096631.2-201ENST00000436136 790 ntBASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.67■□□□□ 0.74
CLIP4Q8N3C7 AC104564.3-201ENST00000582367 638 ntBASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms