Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 AC092666.2-201ENST00000613287 246 ntBASIC19.2■□□□□ 0.66
ATG4DQ86TL0 MIR6084-201ENST00000622012 110 ntBASIC19.2■□□□□ 0.66
ATG4DQ86TL0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATG4DQ86TL0 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 AL024507.2-201ENST00000606070 2574 ntBASIC19.19■□□□□ 0.66
ATG4DQ86TL0 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.19■□□□□ 0.66
ATG4DQ86TL0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4DQ86TL0 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 AF106564.1-201ENST00000607058 2553 ntBASIC19.18■□□□□ 0.66
ATG4DQ86TL0 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ATG4DQ86TL0 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4DQ86TL0 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 AL162430.1-201ENST00000480705 870 ntBASIC19.16■□□□□ 0.66
ATG4DQ86TL0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 CPT2-209ENST00000636935 803 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4DQ86TL0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4DQ86TL0 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms