Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 MIR638-201ENST00000385237 100 ntBASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
ZNF549Q6P9A3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
ZNF549Q6P9A3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
ZNF549Q6P9A3 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.96■□□□□ 0.95
ZNF549Q6P9A3 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 AC105265.2-201ENST00000467189 838 ntBASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
ZNF549Q6P9A3 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 TPRG1LP1-201ENST00000598702 760 ntBASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 AL354811.1-201ENST00000610286 706 ntBASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 MIR6084-201ENST00000622012 110 ntBASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
ZNF549Q6P9A3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms