Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PRKDCP78527 RMI2-205ENST00000576027 818 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC15.55■□□□□ 0.08
PRKDCP78527 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PRKDCP78527 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.55■□□□□ 0.08
PRKDCP78527 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC15.55■□□□□ 0.08
PRKDCP78527 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC15.55■□□□□ 0.08
PRKDCP78527 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC15.54■□□□□ 0.08
PRKDCP78527 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC15.54■□□□□ 0.08
PRKDCP78527 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PRKDCP78527 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC15.54■□□□□ 0.08
PRKDCP78527 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PRKDCP78527 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC15.54■□□□□ 0.08
PRKDCP78527 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PRKDCP78527 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PRKDCP78527 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PRKDCP78527 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PRKDCP78527 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC15.54■□□□□ 0.08
PRKDCP78527 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
PRKDCP78527 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.54■□□□□ 0.08
PRKDCP78527 LSM12P1-201ENST00000411836 588 ntBASIC15.54■□□□□ 0.08
PRKDCP78527 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PRKDCP78527 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.54■□□□□ 0.08
PRKDCP78527 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC15.54■□□□□ 0.08
PRKDCP78527 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKDCP78527 P4HB-223ENST00000576390 439 ntTSL 4 BASIC15.53■□□□□ 0.08
PRKDCP78527 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
PRKDCP78527 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKDCP78527 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 KRT17P3-201ENST00000420566 1262 ntBASIC15.53■□□□□ 0.08
PRKDCP78527 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.53■□□□□ 0.08
PRKDCP78527 MTDHP1-201ENST00000605323 784 ntBASIC15.53■□□□□ 0.08
PRKDCP78527 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC15.53■□□□□ 0.08
PRKDCP78527 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKDCP78527 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
PRKDCP78527 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
PRKDCP78527 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 AL353803.4-201ENST00000565882 1934 ntBASIC15.53■□□□□ 0.08
PRKDCP78527 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKDCP78527 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
PRKDCP78527 TPM4P1-201ENST00000436100 807 ntBASIC15.53■□□□□ 0.08
PRKDCP78527 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
PRKDCP78527 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.53■□□□□ 0.08
PRKDCP78527 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC15.53■□□□□ 0.08
PRKDCP78527 NTF6B-201ENST00000591913 560 ntBASIC15.53■□□□□ 0.08
PRKDCP78527 FGF8-207ENST00000618991 856 ntTSL 3 BASIC15.53■□□□□ 0.08
PRKDCP78527 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKDCP78527 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PRKDCP78527 TK2-204ENST00000525974 1178 ntTSL 2 BASIC15.52■□□□□ 0.08
PRKDCP78527 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
PRKDCP78527 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
PRKDCP78527 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.52■□□□□ 0.07
PRKDCP78527 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC15.52■□□□□ 0.07
PRKDCP78527 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PRKDCP78527 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC15.52■□□□□ 0.07
PRKDCP78527 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.52■□□□□ 0.07
PRKDCP78527 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.52■□□□□ 0.07
PRKDCP78527 DUSP8P4-201ENST00000399538 1761 ntBASIC15.52■□□□□ 0.07
PRKDCP78527 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
PRKDCP78527 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PRKDCP78527 KRT8P9-201ENST00000558927 1449 ntBASIC15.51■□□□□ 0.07
PRKDCP78527 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKDCP78527 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PRKDCP78527 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKDCP78527 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.51■□□□□ 0.07
PRKDCP78527 GRAP-204ENST00000573099 846 ntTSL 3 BASIC15.51■□□□□ 0.07
PRKDCP78527 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PRKDCP78527 AC092368.3-202ENST00000574180 1591 ntBASIC15.51■□□□□ 0.07
PRKDCP78527 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC15.51■□□□□ 0.07
PRKDCP78527 POM121L13P-201ENST00000422362 380 ntBASIC15.51■□□□□ 0.07
PRKDCP78527 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKDCP78527 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.51■□□□□ 0.07
PRKDCP78527 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKDCP78527 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PRKDCP78527 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKDCP78527 TERF1P1-201ENST00000311003 1181 ntBASIC15.51■□□□□ 0.07
PRKDCP78527 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PRKDCP78527 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.51■□□□□ 0.07
PRKDCP78527 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC15.51■□□□□ 0.07
PRKDCP78527 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PRKDCP78527 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
PRKDCP78527 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms