Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HADHAP40939 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HADHAP40939 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.36■■□□□ 1.01
HADHAP40939 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HADHAP40939 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HADHAP40939 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HADHAP40939 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.36■■□□□ 1.01
HADHAP40939 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
HADHAP40939 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.36■■□□□ 1.01
HADHAP40939 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HADHAP40939 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HADHAP40939 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
HADHAP40939 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
HADHAP40939 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.35■■□□□ 1.01
HADHAP40939 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.35■■□□□ 1.01
HADHAP40939 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
HADHAP40939 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HADHAP40939 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
HADHAP40939 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HADHAP40939 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.34■■□□□ 1.01
HADHAP40939 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
HADHAP40939 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HADHAP40939 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HADHAP40939 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
HADHAP40939 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.34■■□□□ 1.01
HADHAP40939 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
HADHAP40939 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.34■■□□□ 1.01
HADHAP40939 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.34■■□□□ 1.01
HADHAP40939 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
HADHAP40939 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
HADHAP40939 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.34■■□□□ 1.01
HADHAP40939 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.33■■□□□ 1.01
HADHAP40939 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.33■■□□□ 1.01
HADHAP40939 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.33■■□□□ 1.01
HADHAP40939 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
HADHAP40939 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HADHAP40939 AC005224.4-201ENST00000583262 1652 ntBASIC21.33■■□□□ 1
HADHAP40939 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
HADHAP40939 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HADHAP40939 AC026471.6-201ENST00000622954 1905 ntBASIC21.33■■□□□ 1
HADHAP40939 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
HADHAP40939 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.32■■□□□ 1
HADHAP40939 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.32■■□□□ 1
HADHAP40939 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.32■■□□□ 1
HADHAP40939 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.32■■□□□ 1
HADHAP40939 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.32■■□□□ 1
HADHAP40939 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.31■■□□□ 1
HADHAP40939 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.31■■□□□ 1
HADHAP40939 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HADHAP40939 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.31■■□□□ 1
HADHAP40939 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
HADHAP40939 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.31■■□□□ 1
HADHAP40939 AC005229.4-201ENST00000610085 2198 ntBASIC21.31■■□□□ 1
HADHAP40939 FEM1AP4-201ENST00000443167 1987 ntBASIC21.3■■□□□ 1
HADHAP40939 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
HADHAP40939 AC027612.3-201ENST00000413684 1047 ntBASIC21.3■■□□□ 1
HADHAP40939 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.3■■□□□ 1
HADHAP40939 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.3■■□□□ 1
HADHAP40939 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.3■■□□□ 1
HADHAP40939 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.3■■□□□ 1
HADHAP40939 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.3■■□□□ 1
HADHAP40939 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.29■■□□□ 1
HADHAP40939 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.29■■□□□ 1
HADHAP40939 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 AC003102.1-202ENST00000563394 1796 ntBASIC21.29■■□□□ 1
HADHAP40939 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.29■■□□□ 1
HADHAP40939 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 AC055733.4-201ENST00000638462 1354 ntBASIC21.29■■□□□ 1
HADHAP40939 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.29■■□□□ 1
HADHAP40939 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.29■■□□□ 1
HADHAP40939 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.29■■□□□ 1
HADHAP40939 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.29■■□□□ 1
HADHAP40939 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HADHAP40939 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms