Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 AC011298.3-201ENST00000615796 283 ntBASIC16.07■□□□□ 0.16
HLA-DMBP28068 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DMBP28068 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DMBP28068 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DMBP28068 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HLA-DMBP28068 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
HLA-DMBP28068 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 EDA-201ENST00000338901 1233 ntBASIC16.06■□□□□ 0.16
HLA-DMBP28068 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 PTMA-205ENST00000410064 814 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 AL355001.2-201ENST00000620617 1191 ntBASIC16.06■□□□□ 0.16
HLA-DMBP28068 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 AL157384.1-201ENST00000445995 2473 ntBASIC16.06■□□□□ 0.16
HLA-DMBP28068 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC16.06■□□□□ 0.16
HLA-DMBP28068 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HLA-DMBP28068 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 SNX3-202ENST00000349379 890 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DMBP28068 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DMBP28068 AP005435.1-201ENST00000529293 1178 ntBASIC16.05■□□□□ 0.16
HLA-DMBP28068 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC16.05■□□□□ 0.16
HLA-DMBP28068 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DMBP28068 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 GRAMD4P4-201ENST00000613563 1115 ntBASIC16.05■□□□□ 0.16
HLA-DMBP28068 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.05■□□□□ 0.16
HLA-DMBP28068 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HLA-DMBP28068 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HLA-DMBP28068 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC16.04■□□□□ 0.16
HLA-DMBP28068 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HLA-DMBP28068 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 EBPL-204ENST00000378272 766 ntTSL 3 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 AL034346.1-201ENST00000568244 1277 ntBASIC16.03■□□□□ 0.16
HLA-DMBP28068 MIR4767-201ENST00000582827 78 ntBASIC16.03■□□□□ 0.16
HLA-DMBP28068 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.03■□□□□ 0.16
HLA-DMBP28068 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HLA-DMBP28068 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DMBP28068 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
HLA-DMBP28068 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.02■□□□□ 0.16
HLA-DMBP28068 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DMBP28068 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
HLA-DMBP28068 SUDS3P1-201ENST00000505831 966 ntBASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms