Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFP01375 AF201337.1-201ENST00000520239 748 ntBASIC20.71■□□□□ 0.91
TNFP01375 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TNFP01375 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFP01375 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFP01375 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFP01375 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
TNFP01375 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFP01375 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFP01375 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TNFP01375 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFP01375 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.71■□□□□ 0.91
TNFP01375 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TNFP01375 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TNFP01375 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
TNFP01375 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
TNFP01375 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 TSPY6P-201ENST00000448518 926 ntBASIC20.7■□□□□ 0.9
TNFP01375 AC007322.4-201ENST00000509611 723 ntBASIC20.7■□□□□ 0.9
TNFP01375 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.7■□□□□ 0.9
TNFP01375 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.7■□□□□ 0.9
TNFP01375 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.7■□□□□ 0.9
TNFP01375 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
TNFP01375 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
TNFP01375 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.7■□□□□ 0.9
TNFP01375 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TNFP01375 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.69■□□□□ 0.9
TNFP01375 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.69■□□□□ 0.9
TNFP01375 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.69■□□□□ 0.9
TNFP01375 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.69■□□□□ 0.9
TNFP01375 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.69■□□□□ 0.9
TNFP01375 AC105036.2-201ENST00000569468 176 ntBASIC20.69■□□□□ 0.9
TNFP01375 AC133552.2-202ENST00000575694 574 ntBASIC20.69■□□□□ 0.9
TNFP01375 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.69■□□□□ 0.9
TNFP01375 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TNFP01375 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.69■□□□□ 0.9
TNFP01375 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.69■□□□□ 0.9
TNFP01375 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 AC068338.2-201ENST00000563278 1430 ntBASIC20.69■□□□□ 0.9
TNFP01375 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TNFP01375 AC061975.6-201ENST00000579045 1553 ntBASIC20.68■□□□□ 0.9
TNFP01375 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
TNFP01375 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.68■□□□□ 0.9
TNFP01375 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.68■□□□□ 0.9
TNFP01375 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.68■□□□□ 0.9
TNFP01375 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TNFP01375 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFP01375 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TNFP01375 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TNFP01375 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TNFP01375 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
TNFP01375 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.67■□□□□ 0.9
TNFP01375 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.67■□□□□ 0.9
TNFP01375 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TNFP01375 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.67■□□□□ 0.9
TNFP01375 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
TNFP01375 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TNFP01375 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.67■□□□□ 0.9
TNFP01375 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TNFP01375 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.66■□□□□ 0.9
TNFP01375 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.66■□□□□ 0.9
TNFP01375 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.66■□□□□ 0.9
TNFP01375 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TNFP01375 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.66■□□□□ 0.9
TNFP01375 AC008694.1-202ENST00000636953 945 ntBASIC20.66■□□□□ 0.9
TNFP01375 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.66■□□□□ 0.9
TNFP01375 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 AC026471.6-201ENST00000622954 1905 ntBASIC20.66■□□□□ 0.9
TNFP01375 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TNFP01375 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms