Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SNX3O60493 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SNX3O60493 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC20.85■□□□□ 0.93
SNX3O60493 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
SNX3O60493 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
SNX3O60493 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 AC139795.1-202ENST00000500444 432 ntBASIC20.85■□□□□ 0.93
SNX3O60493 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SNX3O60493 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.85■□□□□ 0.93
SNX3O60493 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.85■□□□□ 0.93
SNX3O60493 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
SNX3O60493 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SNX3O60493 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
SNX3O60493 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.84■□□□□ 0.93
SNX3O60493 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SNX3O60493 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
SNX3O60493 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC20.84■□□□□ 0.93
SNX3O60493 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.84■□□□□ 0.93
SNX3O60493 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.83■□□□□ 0.93
SNX3O60493 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.83■□□□□ 0.93
SNX3O60493 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.83■□□□□ 0.93
SNX3O60493 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX3O60493 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX3O60493 AL031602.1-201ENST00000633169 911 ntBASIC20.83■□□□□ 0.93
SNX3O60493 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SNX3O60493 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.92
SNX3O60493 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SNX3O60493 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
SNX3O60493 SMG8-203ENST00000578922 2178 ntBASIC20.83■□□□□ 0.92
SNX3O60493 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SNX3O60493 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.83■□□□□ 0.92
SNX3O60493 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 AC112907.3-201ENST00000577781 2400 ntBASIC20.82■□□□□ 0.92
SNX3O60493 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.82■□□□□ 0.92
SNX3O60493 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20.82■□□□□ 0.92
SNX3O60493 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC20.82■□□□□ 0.92
SNX3O60493 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.82■□□□□ 0.92
SNX3O60493 AC020907.5-201ENST00000624372 1936 ntBASIC20.82■□□□□ 0.92
SNX3O60493 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SNX3O60493 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.81■□□□□ 0.92
SNX3O60493 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.81■□□□□ 0.92
SNX3O60493 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC20.81■□□□□ 0.92
SNX3O60493 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC20.81■□□□□ 0.92
SNX3O60493 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.81■□□□□ 0.92
SNX3O60493 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.81■□□□□ 0.92
SNX3O60493 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.81■□□□□ 0.92
SNX3O60493 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
SNX3O60493 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
SNX3O60493 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
SNX3O60493 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SNX3O60493 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.81■□□□□ 0.92
SNX3O60493 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.8■□□□□ 0.92
SNX3O60493 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.8■□□□□ 0.92
SNX3O60493 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 U85056.1-201ENST00000616429 682 ntBASIC20.8■□□□□ 0.92
SNX3O60493 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
SNX3O60493 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
SNX3O60493 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.8■□□□□ 0.92
SNX3O60493 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
SNX3O60493 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms