Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PRKNO60260 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.71■□□□□ 0.75
PRKNO60260 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PRKNO60260 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.7■□□□□ 0.74
PRKNO60260 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.7■□□□□ 0.74
PRKNO60260 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PRKNO60260 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
PRKNO60260 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.7■□□□□ 0.74
PRKNO60260 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC19.7■□□□□ 0.74
PRKNO60260 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.7■□□□□ 0.74
PRKNO60260 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.7■□□□□ 0.74
PRKNO60260 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PRKNO60260 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.69■□□□□ 0.74
PRKNO60260 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
PRKNO60260 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
PRKNO60260 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.69■□□□□ 0.74
PRKNO60260 AC006015.1-201ENST00000429970 570 ntBASIC19.69■□□□□ 0.74
PRKNO60260 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 EEF1DP3-203ENST00000566025 782 ntBASIC19.69■□□□□ 0.74
PRKNO60260 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.69■□□□□ 0.74
PRKNO60260 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.69■□□□□ 0.74
PRKNO60260 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.69■□□□□ 0.74
PRKNO60260 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PRKNO60260 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PRKNO60260 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
PRKNO60260 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.68■□□□□ 0.74
PRKNO60260 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
PRKNO60260 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.68■□□□□ 0.74
PRKNO60260 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.68■□□□□ 0.74
PRKNO60260 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.68■□□□□ 0.74
PRKNO60260 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PRKNO60260 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.67■□□□□ 0.74
PRKNO60260 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PRKNO60260 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.67■□□□□ 0.74
PRKNO60260 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.67■□□□□ 0.74
PRKNO60260 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.67■□□□□ 0.74
PRKNO60260 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.67■□□□□ 0.74
PRKNO60260 AP001160.3-201ENST00000601484 763 ntBASIC19.67■□□□□ 0.74
PRKNO60260 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.67■□□□□ 0.74
PRKNO60260 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.67■□□□□ 0.74
PRKNO60260 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC19.67■□□□□ 0.74
PRKNO60260 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PRKNO60260 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.66■□□□□ 0.74
PRKNO60260 AC079834.2-201ENST00000609776 1949 ntBASIC19.66■□□□□ 0.74
PRKNO60260 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 AC016769.1-201ENST00000409132 1010 ntBASIC19.66■□□□□ 0.74
PRKNO60260 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PRKNO60260 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PRKNO60260 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
PRKNO60260 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.65■□□□□ 0.74
PRKNO60260 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
PRKNO60260 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.65■□□□□ 0.74
PRKNO60260 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PRKNO60260 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.65■□□□□ 0.74
PRKNO60260 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms