Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC17.21■□□□□ 0.35
SSSCA1O60232 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSSCA1O60232 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SSSCA1O60232 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC17.21■□□□□ 0.35
SSSCA1O60232 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
SSSCA1O60232 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC17.21■□□□□ 0.34
SSSCA1O60232 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
SSSCA1O60232 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.2■□□□□ 0.34
SSSCA1O60232 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SSSCA1O60232 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC17.2■□□□□ 0.34
SSSCA1O60232 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC17.2■□□□□ 0.34
SSSCA1O60232 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.2■□□□□ 0.34
SSSCA1O60232 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
SSSCA1O60232 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSSCA1O60232 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SSSCA1O60232 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.19■□□□□ 0.34
SSSCA1O60232 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.19■□□□□ 0.34
SSSCA1O60232 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSSCA1O60232 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSSCA1O60232 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SSSCA1O60232 TSPY13P-201ENST00000338964 914 ntBASIC17.19■□□□□ 0.34
SSSCA1O60232 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC17.19■□□□□ 0.34
SSSCA1O60232 AC103724.3-201ENST00000564481 992 ntBASIC17.19■□□□□ 0.34
SSSCA1O60232 TK2-216ENST00000564917 1156 ntTSL 3 BASIC17.19■□□□□ 0.34
SSSCA1O60232 KRT8P33-201ENST00000508125 1423 ntBASIC17.19■□□□□ 0.34
SSSCA1O60232 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
SSSCA1O60232 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC17.19■□□□□ 0.34
SSSCA1O60232 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.19■□□□□ 0.34
SSSCA1O60232 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
SSSCA1O60232 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 AC138932.1-201ENST00000534164 6830 ntBASIC17.18■□□□□ 0.34
SSSCA1O60232 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.18■□□□□ 0.34
SSSCA1O60232 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
SSSCA1O60232 AL499627.2-201ENST00000606283 725 ntBASIC17.18■□□□□ 0.34
SSSCA1O60232 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.18■□□□□ 0.34
SSSCA1O60232 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SSSCA1O60232 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SSSCA1O60232 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SSSCA1O60232 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.18■□□□□ 0.34
SSSCA1O60232 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.18■□□□□ 0.34
SSSCA1O60232 ME2-216ENST00000639850 2331 ntTSL 5 BASIC17.18■□□□□ 0.34
SSSCA1O60232 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.18■□□□□ 0.34
SSSCA1O60232 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 YBX1P4-201ENST00000392794 808 ntBASIC17.17■□□□□ 0.34
SSSCA1O60232 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SSSCA1O60232 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
SSSCA1O60232 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.17■□□□□ 0.34
SSSCA1O60232 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
SSSCA1O60232 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 AL031602.1-201ENST00000633169 911 ntBASIC17.17■□□□□ 0.34
SSSCA1O60232 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
SSSCA1O60232 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SSSCA1O60232 AL391422.3-201ENST00000603791 2761 ntBASIC17.17■□□□□ 0.34
SSSCA1O60232 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SSSCA1O60232 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC17.16■□□□□ 0.34
SSSCA1O60232 AC103834.1-201ENST00000520383 144 ntBASIC17.16■□□□□ 0.34
SSSCA1O60232 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SSSCA1O60232 PCDHAC2-203ENST00000615316 3011 ntBASIC17.16■□□□□ 0.34
SSSCA1O60232 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms