Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 AL138781.1-201ENST00000566567 1274 ntBASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 AL162412.1-201ENST00000567129 965 ntBASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.69■□□□□ 0.58
MBD3L4A6NDZ8 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 AC073210.2-201ENST00000430369 194 ntBASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 AC069236.1-201ENST00000604339 616 ntBASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 AC008694.1-202ENST00000636953 945 ntBASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.68■□□□□ 0.58
MBD3L4A6NDZ8 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 AL512625.2-201ENST00000417533 625 ntBASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 RGMA-211ENST00000557420 989 ntTSL 3 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC18.67■□□□□ 0.58
MBD3L4A6NDZ8 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 AC069152.1-201ENST00000438030 544 ntBASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 AC133041.1-202ENST00000642053 222 ntBASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 AC026471.6-201ENST00000622954 1905 ntBASIC18.66■□□□□ 0.58
MBD3L4A6NDZ8 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 FAM99A-202ENST00000538190 1989 ntBASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 AL591742.1-201ENST00000604433 565 ntBASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 MARS-234ENST00000630571 216 ntTSL 5 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 MARS-235ENST00000630803 183 ntTSL 3 BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
MBD3L4A6NDZ8 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.64■□□□□ 0.58
MBD3L4A6NDZ8 MKRN4P-201ENST00000444706 1521 ntBASIC18.64■□□□□ 0.58
MBD3L4A6NDZ8 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC18.64■□□□□ 0.58
MBD3L4A6NDZ8 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
MBD3L4A6NDZ8 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
MBD3L4A6NDZ8 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.64■□□□□ 0.57
MBD3L4A6NDZ8 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms