Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 EIF4G2-229ENST00000534272 591 ntTSL 33.97□□□□□ -1.777e-8■■■□□ 15.5
SF3B1O75533 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC18.1■□□□□ 0.492e-6■■■□□ 15.4
SF3B1O75533 SNHG5-203ENST00000420199 1002 ntTSL 316.92■□□□□ 0.32e-6■■■□□ 15.4
SF3B1O75533 SNHG5-215ENST00000623163 851 ntTSL 515.94■□□□□ 0.142e-6■■■□□ 15.4
SF3B1O75533 SNHG5-209ENST00000435947 696 ntTSL 215.27■□□□□ 0.042e-6■■■□□ 15.4
SF3B1O75533 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC13.91□□□□□ -0.182e-6■■■□□ 15.4
SF3B1O75533 SNHG5-206ENST00000428833 641 ntTSL 213.4□□□□□ -0.262e-6■■■□□ 15.4
SF3B1O75533 SNHG5-210ENST00000453754 401 ntTSL 313.4□□□□□ -0.262e-6■■■□□ 15.4
SF3B1O75533 SNHG5-207ENST00000431043 998 ntTSL 213□□□□□ -0.332e-6■■■□□ 15.4
SF3B1O75533 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC13□□□□□ -0.332e-6■■■□□ 15.4
SF3B1O75533 SNHG5-212ENST00000589187 568 ntTSL 4 BASIC12.19□□□□□ -0.462e-6■■■□□ 15.4
SF3B1O75533 SNHG5-202ENST00000414002 430 ntTSL 210.77□□□□□ -0.692e-6■■■□□ 15.4
SF3B1O75533 SNHG5-220ENST00000624128 672 ntTSL 29.41□□□□□ -0.92e-6■■■□□ 15.4
SF3B1O75533 SNHG5-218ENST00000623901 711 ntTSL 5 BASIC8.9□□□□□ -0.982e-6■■■□□ 15.4
SF3B1O75533 SNHG5-217ENST00000623650 886 ntTSL 58.68□□□□□ -1.022e-6■■■□□ 15.4
SF3B1O75533 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC6.91□□□□□ -1.32e-6■■■□□ 15.4
SF3B1O75533 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.92□□□□□ -1.462e-6■■■□□ 15.4
SF3B1O75533 SNHG5-216ENST00000623267 374 ntTSL 55.92□□□□□ -1.462e-6■■■□□ 15.4
SF3B1O75533 SNHG5-204ENST00000425170 489 ntTSL 25.23□□□□□ -1.572e-6■■■□□ 15.4
SF3B1O75533 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.23□□□□□ -1.732e-6■■■□□ 15.4
SF3B1O75533 SNHG5-205ENST00000427501 680 ntTSL 23.89□□□□□ -1.792e-6■■■□□ 15.4
SF3B1O75533 SNHG5-208ENST00000433843 388 ntTSL 21.75□□□□□ -2.132e-6■■■□□ 15.4
SF3B1O75533 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.95□□□□□ -0.181e-16■■■□□ 15.4
SF3B1O75533 ARGLU1-204ENST00000472226 1336 ntTSL 26.25□□□□□ -1.411e-16■■■□□ 15.4
SF3B1O75533 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.451e-16■■■□□ 15.4
SF3B1O75533 ARGLU1-201ENST00000360629 361 ntTSL 23.23□□□□□ -1.891e-16■■■□□ 15.4
SF3B1O75533 CD46-214ENST00000480003 1258 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.772e-8■■■□□ 15.4
SF3B1O75533 CD46-202ENST00000322918 3124 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.92e-8■■■□□ 15.4
SF3B1O75533 CD46-206ENST00000360212 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC8.93□□□□□ -0.982e-8■■■□□ 15.4
SF3B1O75533 CD46-209ENST00000367047 3089 ntTSL 5 BASIC8.75□□□□□ -1.012e-8■■■□□ 15.4
SF3B1O75533 CD46-208ENST00000367042 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.072e-8■■■□□ 15.4
SF3B1O75533 CD46-205ENST00000358170 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC8.33□□□□□ -1.082e-8■■■□□ 15.4
SF3B1O75533 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC8.2□□□□□ -1.12e-8■■■□□ 15.4
SF3B1O75533 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC8.17□□□□□ -1.12e-8■■■□□ 15.4
SF3B1O75533 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC8.17□□□□□ -1.12e-8■■■□□ 15.4
SF3B1O75533 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.142e-8■■■□□ 15.4
SF3B1O75533 CD46-212ENST00000469535 7826 ntTSL 1 (best)7.24□□□□□ -1.252e-8■■■□□ 15.4
SF3B1O75533 CD46-210ENST00000462968 473 ntTSL 33.17□□□□□ -1.92e-8■■■□□ 15.4
SF3B1O75533 CD46-219ENST00000636114 2098 ntTSL 52.64□□□□□ -1.992e-8■■■□□ 15.4
SF3B1O75533 CD46-213ENST00000471987 572 ntTSL 32.61□□□□□ -1.992e-8■■■□□ 15.4
SF3B1O75533 CD46-215ENST00000488596 872 ntTSL 32.33□□□□□ -2.042e-8■■■□□ 15.4
SF3B1O75533 GTPBP2-203ENST00000419497 1394 ntTSL 217.21■□□□□ 0.352e-6■■■□□ 15.3
SF3B1O75533 GTPBP2-204ENST00000432918 1850 ntTSL 313.15□□□□□ -0.312e-6■■■□□ 15.3
SF3B1O75533 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC19.75■□□□□ 0.755e-6■■■□□ 15.3
SF3B1O75533 UBAC1-202ENST00000465873 882 ntTSL 217.86■□□□□ 0.455e-10■■■□□ 15.3
SF3B1O75533 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.99□□□□□ -0.175e-6■■■□□ 15.3
SF3B1O75533 SRSF1-204ENST00000581979 1720 ntTSL 1 (best)13.2□□□□□ -0.35e-6■■■□□ 15.3
SF3B1O75533 UBAC1-206ENST00000489050 864 ntTSL 310.58□□□□□ -0.715e-10■■■□□ 15.3
SF3B1O75533 SRSF1-207ENST00000584668 758 ntTSL 39.45□□□□□ -0.95e-6■■■□□ 15.3
SF3B1O75533 SRSF1-203ENST00000581497 438 ntTSL 38.59□□□□□ -1.035e-6■■■□□ 15.3
SF3B1O75533 AC015813.1-201ENST00000582096 2483 nt8.13□□□□□ -1.114e-7■■■□□ 15.3
SF3B1O75533 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.55□□□□□ -1.524e-7■■■□□ 15.3
SF3B1O75533 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.55□□□□□ -1.684e-7■■■□□ 15.3
SF3B1O75533 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.17□□□□□ -2.063e-6■■■□□ 15.3
SF3B1O75533 PI4KAP2-207ENST00000476537 276 ntTSL 230.03■■■□□ 2.46e-7■■■□□ 15.3
SF3B1O75533 PI4KAP2-209ENST00000479693 1906 ntTSL 1 (best)28.18■■■□□ 2.16e-7■■■□□ 15.3
SF3B1O75533 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.44■■□□□ 1.986e-7■■■□□ 15.3
SF3B1O75533 GABBR1-207ENST00000467259 1252 ntTSL 226.27■■□□□ 1.86e-7■■■□□ 15.3
SF3B1O75533 PI4KAP2-212ENST00000491562 209 ntTSL 520.55■□□□□ 0.886e-7■■■□□ 15.3
SF3B1O75533 PI4KAP2-205ENST00000467443 1869 ntTSL 218.42■□□□□ 0.546e-7■■■□□ 15.3
SF3B1O75533 SLC3A2-221ENST00000544377 589 ntTSL 418.22■□□□□ 0.518e-10■■■□□ 15.3
SF3B1O75533 TRIM28-213ENST00000598355 714 ntTSL 217.61■□□□□ 0.416e-7■■■□□ 15.3
SF3B1O75533 SLC3A2-216ENST00000541372 269 ntTSL 516.74■□□□□ 0.278e-10■■■□□ 15.3
SF3B1O75533 GABBR1-206ENST00000462632 609 ntTSL 415.29■□□□□ 0.046e-7■■■□□ 15.3
SF3B1O75533 TRIM28-214ENST00000600840 338 ntTSL 29.47□□□□□ -0.896e-7■■■□□ 15.3
SF3B1O75533 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC22.56■■□□□ 1.21e-6■■■□□ 15.3
SF3B1O75533 OIP5-AS1-201ENST00000500949 8829 ntTSL 1 (best) BASIC9.16□□□□□ -0.941e-6■■■□□ 15.3
SF3B1O75533 RPL10-208ENST00000449494 622 ntTSL 516.21■□□□□ 0.199e-21■■■□□ 15.3
SF3B1O75533 RPL10-205ENST00000427682 457 ntTSL 511.29□□□□□ -0.69e-21■■■□□ 15.3
SF3B1O75533 RPL10-206ENST00000428169 292 ntTSL 510.7□□□□□ -0.79e-21■■■□□ 15.3
SF3B1O75533 SNHG1-225ENST00000545920 625 ntTSL 26.67□□□□□ -1.344e-7■■■□□ 15.2
SF3B1O75533 HSP90AA1-208ENST00000557234 584 ntTSL 320.21■□□□□ 0.834e-8■■■□□ 15.1
SF3B1O75533 HSP90AA1-206ENST00000556554 552 ntTSL 26.56□□□□□ -1.364e-8■■■□□ 15.1
SF3B1O75533 GOLGA3-204ENST00000534967 484 ntTSL 329.24■■■□□ 2.272e-6■■■□□ 15.1
SF3B1O75533 RARS-208ENST00000522834 559 ntTSL 516.47■□□□□ 0.232e-6■■■□□ 15.1
SF3B1O75533 TFRC-204ENST00000421258 524 ntTSL 314.33□□□□□ -0.122e-6■■■□□ 15.1
SF3B1O75533 SRSF4-208ENST00000634348 8128 ntTSL 511.82□□□□□ -0.521e-6■■■□□ 15.1
SF3B1O75533 TFRC-208ENST00000464011 546 ntTSL 411.73□□□□□ -0.532e-6■■■□□ 15.1
SF3B1O75533 RARS-201ENST00000231572 2146 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.662e-6■■■□□ 15.1
SF3B1O75533 RARS-204ENST00000520013 1990 ntTSL 27.35□□□□□ -1.232e-6■■■□□ 15.1
SF3B1O75533 GALNT12-202ENST00000470473 772 ntTSL 25.41□□□□□ -1.542e-6■■■□□ 15.1
SF3B1O75533 MPP1-214ENST00000488694 550 ntTSL 25.3□□□□□ -1.562e-6■■■□□ 15.1
SF3B1O75533 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC5.32□□□□□ -1.564e-11■■■□□ 15
SF3B1O75533 TFRC-211ENST00000475593 875 ntTSL 36.58□□□□□ -1.367e-7■■■□□ 14.9
SF3B1O75533 HNRNPH1-247ENST00000523921 584 ntTSL 212.55□□□□□ -0.41e-7■■■□□ 14.9
SF3B1O75533 HNRNPH1-238ENST00000521116 806 ntTSL 422.88■■□□□ 1.258e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-228ENST00000515714 690 ntTSL 420.68■□□□□ 0.98e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-212ENST00000505087 592 ntTSL 319.41■□□□□ 0.78e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-208ENST00000503664 569 ntTSL 418.14■□□□□ 0.498e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-225ENST00000515158 850 ntTSL 417.39■□□□□ 0.378e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-226ENST00000515446 368 ntTSL 216.57■□□□□ 0.248e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-220ENST00000513225 805 ntTSL 415.4■□□□□ 0.068e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-209ENST00000504348 594 ntTSL 414.85□□□□□ -0.038e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-234ENST00000519707 582 ntTSL 214.49□□□□□ -0.098e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-233ENST00000519455 451 ntTSL 414.48□□□□□ -0.098e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-222ENST00000513972 761 ntTSL 213.87□□□□□ -0.198e-7■■■□□ 14.8
SF3B1O75533 HNRNPH1-219ENST00000512273 501 ntTSL 49.55□□□□□ -0.888e-7■■■□□ 14.8
SF3B1O75533 KANSL1-209ENST00000574655 1681 ntTSL 517.14■□□□□ 0.331e-6■■■□□ 14.8
SF3B1O75533 KANSL1-222ENST00000639099 1724 ntTSL 516.56■□□□□ 0.241e-6■■■□□ 14.8
SF3B1O75533 ATXN2L-222ENST00000567024 525 ntTSL 319.04■□□□□ 0.647e-10■■■□□ 14.8
Retrieved 100 of 46,956 protein–RNA pairs in 3957.1 ms