Protein–RNA interactions for Protein: Q9UKI2

CDC42EP3, Cdc42 effector protein 3, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42EP3Q9UKI2 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 AP001160.3-201ENST00000601484 763 ntBASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 LINC00565-201ENST00000562710 2331 ntBASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.65■□□□□ 0.42
CDC42EP3Q9UKI2 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 AP006294.2-201ENST00000641667 209 ntBASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 EP400NL-214ENST00000641289 2402 ntBASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.64■□□□□ 0.41
CDC42EP3Q9UKI2 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CDC42EP3Q9UKI2 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 USP45-205ENST00000472914 1617 ntTSL 5 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 RNA5SP413-201ENST00000516373 109 ntBASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 ARL16-209ENST00000573715 763 ntTSL 3 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 ARL16-211ENST00000576135 694 ntTSL 3 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.62■□□□□ 0.41
CDC42EP3Q9UKI2 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 MFF-207ENST00000409565 1548 ntTSL 2 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC17.61■□□□□ 0.41
CDC42EP3Q9UKI2 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDC42EP3Q9UKI2 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDC42EP3Q9UKI2 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDC42EP3Q9UKI2 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CDC42EP3Q9UKI2 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CDC42EP3Q9UKI2 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms