Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
ZNF540Q8NDQ6 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ZNF540Q8NDQ6 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
ZNF540Q8NDQ6 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 FEM1AP1-201ENST00000431297 1995 ntBASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 MIR638-201ENST00000385237 100 ntBASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
ZNF540Q8NDQ6 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.52■□□□□ 0.71
ZNF540Q8NDQ6 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF540Q8NDQ6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF540Q8NDQ6 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF540Q8NDQ6 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
ZNF540Q8NDQ6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 SNX5-217ENST00000606557 1087 ntBASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 AC007952.6-201ENST00000573168 2673 ntBASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 AC003957.1-201ENST00000625108 2673 ntBASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
ZNF540Q8NDQ6 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 AC004687.1-201ENST00000579003 1625 ntBASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ZNF540Q8NDQ6 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms