Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CLIP4Q8N3C7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CLIP4Q8N3C7 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
CLIP4Q8N3C7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CLIP4Q8N3C7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 MIR4767-201ENST00000582827 78 ntBASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP4Q8N3C7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.75■□□□□ 0.75
CLIP4Q8N3C7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 AC024257.2-201ENST00000549699 147 ntBASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.74■□□□□ 0.75
CLIP4Q8N3C7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 Z98882.1-201ENST00000622160 2253 ntBASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 AL136162.1-201ENST00000607711 1078 ntBASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLIP4Q8N3C7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms