Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 AC022413.1-201ENST00000624602 984 ntBASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 AC005332.8-201ENST00000622750 2735 ntBASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC28AQ8IWP9 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC28AQ8IWP9 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 AC060814.1-201ENST00000554326 538 ntBASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC28AQ8IWP9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC28AQ8IWP9 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC28AQ8IWP9 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 MIR4449-201ENST00000578365 66 ntBASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC28AQ8IWP9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CCDC28AQ8IWP9 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 AP000974.1-201ENST00000623909 2387 ntBASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CCDC28AQ8IWP9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms