Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.77■□□□□ 0.92
SDC3O75056 AC093787.1-201ENST00000450396 207 ntBASIC20.77■□□□□ 0.92
SDC3O75056 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.77■□□□□ 0.92
SDC3O75056 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.77■□□□□ 0.92
SDC3O75056 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.77■□□□□ 0.92
SDC3O75056 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.77■□□□□ 0.92
SDC3O75056 AC016405.3-201ENST00000607710 860 ntBASIC20.77■□□□□ 0.92
SDC3O75056 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.77■□□□□ 0.92
SDC3O75056 TBCB-214ENST00000629269 413 ntTSL 5 BASIC20.77■□□□□ 0.92
SDC3O75056 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SDC3O75056 AC139530.1-201ENST00000575312 1977 ntBASIC20.77■□□□□ 0.92
SDC3O75056 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SDC3O75056 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SDC3O75056 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SDC3O75056 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.77■□□□□ 0.91
SDC3O75056 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SDC3O75056 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.77■□□□□ 0.91
SDC3O75056 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.76■□□□□ 0.91
SDC3O75056 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.76■□□□□ 0.91
SDC3O75056 MIPEPP3-201ENST00000412105 444 ntBASIC20.76■□□□□ 0.91
SDC3O75056 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.76■□□□□ 0.91
SDC3O75056 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 AC008175.2-201ENST00000612840 297 ntBASIC20.76■□□□□ 0.91
SDC3O75056 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.76■□□□□ 0.91
SDC3O75056 AC120498.10-201ENST00000621827 505 ntBASIC20.76■□□□□ 0.91
SDC3O75056 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
SDC3O75056 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.76■□□□□ 0.91
SDC3O75056 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SDC3O75056 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.76■□□□□ 0.91
SDC3O75056 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SDC3O75056 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
SDC3O75056 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 FAM201B-201ENST00000458407 597 ntBASIC20.75■□□□□ 0.91
SDC3O75056 AC008694.1-202ENST00000636953 945 ntBASIC20.75■□□□□ 0.91
SDC3O75056 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.75■□□□□ 0.91
SDC3O75056 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.75■□□□□ 0.91
SDC3O75056 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.75■□□□□ 0.91
SDC3O75056 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SDC3O75056 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.74■□□□□ 0.91
SDC3O75056 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.74■□□□□ 0.91
SDC3O75056 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC20.74■□□□□ 0.91
SDC3O75056 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.74■□□□□ 0.91
SDC3O75056 MIR4758-201ENST00000577688 71 ntBASIC20.74■□□□□ 0.91
SDC3O75056 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SDC3O75056 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SDC3O75056 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.73■□□□□ 0.91
SDC3O75056 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
SDC3O75056 AC073210.2-201ENST00000430369 194 ntBASIC20.73■□□□□ 0.91
SDC3O75056 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.73■□□□□ 0.91
SDC3O75056 AC007322.4-201ENST00000509611 723 ntBASIC20.73■□□□□ 0.91
SDC3O75056 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SDC3O75056 RNA5SP413-201ENST00000516373 109 ntBASIC20.73■□□□□ 0.91
SDC3O75056 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.73■□□□□ 0.91
SDC3O75056 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.73■□□□□ 0.91
SDC3O75056 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.73■□□□□ 0.91
SDC3O75056 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.73■□□□□ 0.91
SDC3O75056 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.73■□□□□ 0.91
SDC3O75056 AC066615.1-201ENST00000640911 628 ntBASIC20.73■□□□□ 0.91
SDC3O75056 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SDC3O75056 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SDC3O75056 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC3O75056 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.72■□□□□ 0.91
SDC3O75056 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SDC3O75056 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC3O75056 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC3O75056 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms