Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.63■□□□□ 0.89
HDAC3O15379 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.63■□□□□ 0.89
HDAC3O15379 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.63■□□□□ 0.89
HDAC3O15379 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.63■□□□□ 0.89
HDAC3O15379 UNC93B8-201ENST00000511903 705 ntBASIC20.63■□□□□ 0.89
HDAC3O15379 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.63■□□□□ 0.89
HDAC3O15379 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.63■□□□□ 0.89
HDAC3O15379 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
HDAC3O15379 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HDAC3O15379 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.62■□□□□ 0.89
HDAC3O15379 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HDAC3O15379 AC009299.2-201ENST00000482477 511 ntBASIC20.62■□□□□ 0.89
HDAC3O15379 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HDAC3O15379 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HDAC3O15379 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC3O15379 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.61■□□□□ 0.89
HDAC3O15379 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC3O15379 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC3O15379 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
HDAC3O15379 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.61■□□□□ 0.89
HDAC3O15379 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.61■□□□□ 0.89
HDAC3O15379 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.61■□□□□ 0.89
HDAC3O15379 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
HDAC3O15379 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
HDAC3O15379 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HDAC3O15379 AC092667.1-201ENST00000434301 2586 ntBASIC20.6■□□□□ 0.89
HDAC3O15379 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC3O15379 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC3O15379 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.6■□□□□ 0.89
HDAC3O15379 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HDAC3O15379 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HDAC3O15379 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.6■□□□□ 0.89
HDAC3O15379 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
HDAC3O15379 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.6■□□□□ 0.89
HDAC3O15379 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.6■□□□□ 0.89
HDAC3O15379 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC3O15379 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC3O15379 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC3O15379 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
HDAC3O15379 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HDAC3O15379 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
HDAC3O15379 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.6■□□□□ 0.89
HDAC3O15379 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.59■□□□□ 0.89
HDAC3O15379 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HDAC3O15379 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HDAC3O15379 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.59■□□□□ 0.89
HDAC3O15379 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
HDAC3O15379 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC3O15379 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.58■□□□□ 0.89
HDAC3O15379 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC3O15379 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC3O15379 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
HDAC3O15379 AP004607.7-201ENST00000527152 1677 ntBASIC20.58■□□□□ 0.89
HDAC3O15379 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.58■□□□□ 0.89
HDAC3O15379 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC3O15379 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.58■□□□□ 0.89
HDAC3O15379 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC3O15379 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
HDAC3O15379 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.58■□□□□ 0.89
HDAC3O15379 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
HDAC3O15379 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC3O15379 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC3O15379 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC3O15379 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HDAC3O15379 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 AL121603.2-201ENST00000557373 2117 ntBASIC20.57■□□□□ 0.88
HDAC3O15379 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HDAC3O15379 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.57■□□□□ 0.88
HDAC3O15379 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
HDAC3O15379 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
HDAC3O15379 RARRES2P1-201ENST00000474487 481 ntBASIC20.57■□□□□ 0.88
HDAC3O15379 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
HDAC3O15379 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HDAC3O15379 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms