Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 MED24-221ENST00000580008 957 ntTSL 1 (best)20.23■□□□□ 0.838e-6■■■□□ 17.8
SF3B1O75533 ATP6V1B2-203ENST00000520830 649 ntTSL 319.35■□□□□ 0.698e-6■■■□□ 17.8
SF3B1O75533 NELFCD-208ENST00000482747 1701 ntTSL 218.51■□□□□ 0.558e-6■■■□□ 17.8
SF3B1O75533 LEPR-206ENST00000462765 2117 ntTSL 1 (best)17.41■□□□□ 0.387e-9■■■□□ 17.8
SF3B1O75533 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.378e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.07■□□□□ 0.328e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-203ENST00000519428 676 ntTSL 217■□□□□ 0.318e-6■■■□□ 17.8
SF3B1O75533 MED24-233ENST00000585306 597 ntTSL 416.74■□□□□ 0.278e-6■■■□□ 17.8
SF3B1O75533 ATP6V1B2-205ENST00000523478 572 ntTSL 415.88■□□□□ 0.138e-6■■■□□ 17.8
SF3B1O75533 RPL5-201ENST00000315741 681 ntTSL 515.24■□□□□ 0.038e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.85□□□□□ -0.038e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.078e-6■■■□□ 17.8
SF3B1O75533 GORASP2-207ENST00000486498 2096 ntTSL 214.18□□□□□ -0.148e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-208ENST00000615676 5092 ntTSL 1 (best)13.89□□□□□ -0.198e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC13.82□□□□□ -0.28e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC13.67□□□□□ -0.228e-6■■■□□ 17.8
SF3B1O75533 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.278e-6■■■□□ 17.8
SF3B1O75533 SYVN1-215ENST00000533685 485 ntTSL 313.27□□□□□ -0.298e-6■■■□□ 17.8
SF3B1O75533 LEPR-201ENST00000344610 2935 ntTSL 1 (best) BASIC13.02□□□□□ -0.337e-9■■■□□ 17.8
SF3B1O75533 MED24-216ENST00000543759 628 ntTSL 412.6□□□□□ -0.398e-6■■■□□ 17.8
SF3B1O75533 SYVN1-205ENST00000525874 475 ntTSL 312.28□□□□□ -0.448e-6■■■□□ 17.8
SF3B1O75533 MED24-229ENST00000582023 592 ntTSL 411.72□□□□□ -0.538e-6■■■□□ 17.8
SF3B1O75533 BAGE2-203ENST00000496773 2598 ntBASIC11.08□□□□□ -0.648e-6■■■□□ 17.8
SF3B1O75533 SNRNP40-201ENST00000263694 1597 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.758e-6■■■□□ 17.8
SF3B1O75533 YTHDF3-210ENST00000617952 420 ntTSL 38.88□□□□□ -0.998e-6■■■□□ 17.8
SF3B1O75533 MED24-215ENST00000537674 548 ntTSL 38.42□□□□□ -1.068e-6■■■□□ 17.8
SF3B1O75533 MED24-223ENST00000580517 567 ntTSL 48.42□□□□□ -1.068e-6■■■□□ 17.8
SF3B1O75533 DDX24-206ENST00000555324 810 ntTSL 1 (best)8.14□□□□□ -1.118e-6■■■□□ 17.8
SF3B1O75533 LRCH3-204ENST00000428136 3205 ntTSL 58.12□□□□□ -1.118e-6■■■□□ 17.8
SF3B1O75533 DNAJC7-207ENST00000586335 579 ntTSL 37.56□□□□□ -1.28e-6■■■□□ 17.8
SF3B1O75533 MED21-206ENST00000546323 575 ntTSL 3 BASIC6.81□□□□□ -1.328e-6■■■□□ 17.8
SF3B1O75533 MED21-204ENST00000538186 552 ntTSL 36.49□□□□□ -1.378e-6■■■□□ 17.8
SF3B1O75533 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.9□□□□□ -1.467e-9■■■□□ 17.8
SF3B1O75533 SNRNP40-204ENST00000474025 581 ntTSL 35.72□□□□□ -1.498e-6■■■□□ 17.8
SF3B1O75533 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.538e-6■■■□□ 17.8
SF3B1O75533 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.51□□□□□ -1.538e-6■■■□□ 17.8
SF3B1O75533 MED24-218ENST00000578161 580 ntTSL 35.38□□□□□ -1.558e-6■■■□□ 17.8
SF3B1O75533 CD69-204ENST00000543147 605 ntTSL 25.35□□□□□ -1.558e-6■■■□□ 17.8
SF3B1O75533 CD69-202ENST00000416624 962 ntTSL 25.02□□□□□ -1.618e-6■■■□□ 17.8
SF3B1O75533 RPL5-203ENST00000461952 1116 ntTSL 24.7□□□□□ -1.668e-6■■■□□ 17.8
SF3B1O75533 RPL5-204ENST00000470843 694 ntTSL 34.6□□□□□ -1.678e-6■■■□□ 17.8
SF3B1O75533 LRCH3-211ENST00000466054 683 ntTSL 22.98□□□□□ -1.938e-6■■■□□ 17.8
SF3B1O75533 CD69-203ENST00000536709 1020 ntTSL 2 BASIC2.95□□□□□ -1.948e-6■■■□□ 17.8
SF3B1O75533 ANKRD12-205ENST00000546007 978 ntTSL 52.7□□□□□ -1.988e-6■■■□□ 17.8
SF3B1O75533 MAP3K7-206ENST00000479630 2214 ntTSL 22.62□□□□□ -1.998e-6■■■□□ 17.8
SF3B1O75533 ANKRD12-202ENST00000359158 2250 ntTSL 22.39□□□□□ -2.038e-6■■■□□ 17.8
SF3B1O75533 CREBZF-206ENST00000528561 1099 ntTSL 521.37■■□□□ 1.011e-13■■■□□ 17.8
SF3B1O75533 CREBZF-203ENST00000525639 2850 ntTSL 518.38■□□□□ 0.531e-13■■■□□ 17.8
SF3B1O75533 CREBZF-201ENST00000260058 1431 ntTSL 218.1■□□□□ 0.491e-13■■■□□ 17.8
SF3B1O75533 CREBZF-208ENST00000531515 724 ntTSL 315.72■□□□□ 0.111e-13■■■□□ 17.8
SF3B1O75533 CREBZF-205ENST00000527529 898 ntTSL 515.37■□□□□ 0.051e-13■■■□□ 17.8
SF3B1O75533 HNRNPH3-206ENST00000478698 1507 ntTSL 215.34■□□□□ 0.051e-13■■■□□ 17.8
SF3B1O75533 HNRNPH3-210ENST00000490442 1521 ntTSL 215.34■□□□□ 0.051e-13■■■□□ 17.8
SF3B1O75533 HNRNPH3-211ENST00000491200 2308 ntTSL 1 (best)14.49□□□□□ -0.091e-13■■■□□ 17.8
SF3B1O75533 CREBZF-202ENST00000490820 4329 ntTSL 1 (best)14.03□□□□□ -0.161e-13■■■□□ 17.8
SF3B1O75533 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)13.92□□□□□ -0.181e-13■■■□□ 17.8
SF3B1O75533 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC13.62□□□□□ -0.231e-13■■■□□ 17.8
SF3B1O75533 CREBZF-207ENST00000528889 745 ntTSL 37.74□□□□□ -1.171e-13■■■□□ 17.8
SF3B1O75533 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.12□□□□□ -1.431e-13■■■□□ 17.8
SF3B1O75533 SCARB1-209ENST00000545305 851 ntTSL 214.63□□□□□ -0.073e-8■■■□□ 17.7
SF3B1O75533 ATXN2L-213ENST00000564162 770 ntTSL 519.35■□□□□ 0.691e-6■■■□□ 17.7
SF3B1O75533 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.68■□□□□ 0.11e-6■■■□□ 17.7
SF3B1O75533 FUBP1-201ENST00000294623 2201 ntTSL 1 (best)14.87□□□□□ -0.037e-6■■■□□ 17.6
SF3B1O75533 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.237e-6■■■□□ 17.6
SF3B1O75533 FUBP1-202ENST00000370767 2524 ntTSL 5 BASIC12.24□□□□□ -0.457e-6■■■□□ 17.6
SF3B1O75533 NONO-211ENST00000473525 1430 ntTSL 510.99□□□□□ -0.656e-7■■■□□ 17.5
SF3B1O75533 DDX5-208ENST00000578491 463 ntTSL 25.91□□□□□ -1.462e-6■■■□□ 17.5
SF3B1O75533 EZH2-210ENST00000498186 1876 ntTSL 225.54■■□□□ 1.682e-6■■■□□ 17.5
SF3B1O75533 EZH2-207ENST00000483012 1491 ntTSL 225.43■■□□□ 1.662e-6■■■□□ 17.5
SF3B1O75533 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.713e-6■■■□□ 17.4
SF3B1O75533 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.523e-6■■■□□ 17.4
SF3B1O75533 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.283e-6■■■□□ 17.4
SF3B1O75533 RPL36-204ENST00000579446 452 ntTSL 2 BASIC12.05□□□□□ -0.483e-6■■■□□ 17.4
SF3B1O75533 RPL36-205ENST00000579649 449 ntAPPRIS P1 TSL 5 BASIC10.37□□□□□ -0.753e-6■■■□□ 17.4
SF3B1O75533 ATXN2L-206ENST00000561539 509 ntTSL 34.21□□□□□ -1.737e-8■■■□□ 17.4
SF3B1O75533 ATXN2L-220ENST00000566080 329 ntTSL 32.73□□□□□ -1.977e-8■■■□□ 17.4
SF3B1O75533 LBR-204ENST00000424022 478 ntTSL 35.75□□□□□ -1.497e-6■■■□□ 17.4
SF3B1O75533 ACTR3-207ENST00000489779 545 ntTSL 24.19□□□□□ -1.742e-9■■■□□ 17.3
SF3B1O75533 ACTR3-206ENST00000484165 676 ntTSL 24.11□□□□□ -1.752e-9■■■□□ 17.3
SF3B1O75533 RANBP1-204ENST00000416427 645 ntTSL 527.6■■■□□ 2.017e-6■■■□□ 17.2
SF3B1O75533 PCM1-209ENST00000518930 575 ntTSL 326.17■■□□□ 1.781e-6■■■□□ 17.2
SF3B1O75533 SYMPK-212ENST00000598896 1899 ntTSL 1 (best)24.62■■□□□ 1.531e-6■■■□□ 17.2
SF3B1O75533 SYMPK-208ENST00000598059 611 ntTSL 423.5■■□□□ 1.351e-6■■■□□ 17.2
SF3B1O75533 MIB2-212ENST00000486072 568 ntTSL 323.43■■□□□ 1.342e-10■■■□□ 17.2
SF3B1O75533 ORC6-207ENST00000569239 1833 ntTSL 222.53■■□□□ 1.22e-7■■■□□ 17.2
SF3B1O75533 UBXN4-202ENST00000415164 548 ntTSL 421.39■■□□□ 1.012e-7■■■□□ 17.2
SF3B1O75533 DBF4-202ENST00000413643 2694 ntTSL 1 (best)21.37■■□□□ 1.011e-6■■■□□ 17.2
SF3B1O75533 SEC63-203ENST00000446496 583 ntTSL 420.79■□□□□ 0.921e-6■■■□□ 17.2
SF3B1O75533 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.781e-6■■■□□ 17.2
SF3B1O75533 SYMPK-205ENST00000594293 623 ntTSL 419.5■□□□□ 0.711e-6■■■□□ 17.2
SF3B1O75533 ARFGAP1-213ENST00000520022 558 ntTSL 419.25■□□□□ 0.671e-6■■■□□ 17.2
SF3B1O75533 ORC6-202ENST00000563306 1190 ntTSL 219.04■□□□□ 0.642e-7■■■□□ 17.2
SF3B1O75533 SPPL2B-214ENST00000622308 749 ntTSL 1 (best)19.01■□□□□ 0.631e-6■■■□□ 17.2
SF3B1O75533 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.627e-6■■■□□ 17.2
SF3B1O75533 ORC6-208ENST00000570260 561 ntTSL 218.37■□□□□ 0.532e-7■■■□□ 17.2
SF3B1O75533 SPPL2B-208ENST00000612623 495 ntTSL 518.35■□□□□ 0.531e-6■■■□□ 17.2
SF3B1O75533 SYMPK-204ENST00000593959 546 ntTSL 418.11■□□□□ 0.491e-6■■■□□ 17.2
SF3B1O75533 RANBP1-206ENST00000421656 333 ntTSL 317.93■□□□□ 0.467e-6■■■□□ 17.2
SF3B1O75533 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.17■□□□□ 0.341e-6■■■□□ 17.2
SF3B1O75533 SPPL2B-206ENST00000593243 551 ntTSL 417.09■□□□□ 0.331e-6■■■□□ 17.2
Retrieved 100 of 46,956 protein–RNA pairs in 3873.5 ms