RNA–Protein interactions for RNA: ENST00000466054.1

LRCH3-211, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 2

Gene LRCH3, Length 683 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-211ENST00000466054 AEBP2Q6ZN18 517 aaPredicted RBP31.17■■■□□ 2.58
LRCH3-211ENST00000466054 CHIC1Q5VXU3 224 aa29.36■■■□□ 2.29
LRCH3-211ENST00000466054 SENP3Q9H4L4 574 aaPredicted RBP26.8■■□□□ 1.88
LRCH3-211ENST00000466054 PHF23Q9BUL5 403 aaPredicted RBP26.36■■□□□ 1.81
LRCH3-211ENST00000466054 FOXD1Q16676 465 aa24.92■■□□□ 1.58
LRCH3-211ENST00000466054 MSH5O43196 834 aa23.57■■□□□ 1.36
LRCH3-211ENST00000466054 POTEDQ86YR6 584 aa23.57■■□□□ 1.36
LRCH3-211ENST00000466054 PLPPR3Q6T4P5 718 aa23.39■■□□□ 1.33
LRCH3-211ENST00000466054 PIAS4Q8N2W9 510 aaPredicted RBP23.33■■□□□ 1.33
LRCH3-211ENST00000466054 PPP6R1Q9UPN7 881 aa23■■□□□ 1.27
LRCH3-211ENST00000466054 ADRA2BP18089 450 aa22.98■■□□□ 1.27
LRCH3-211ENST00000466054 MAPK8IP2Q13387 824 aaPredicted RBP21.18■□□□□ 0.98
LRCH3-211ENST00000466054 SCAF1Q9H7N4 1312 aaKnown RBP21.18■□□□□ 0.98
LRCH3-211ENST00000466054 DMRT2Q9Y5R5 561 aa21.14■□□□□ 0.97
LRCH3-211ENST00000466054 DCAF8L1A6NGE4 600 aa20.51■□□□□ 0.87
LRCH3-211ENST00000466054 CACNB1Q02641 598 aaPredicted RBP20.48■□□□□ 0.87
LRCH3-211ENST00000466054 PPP4R3CPQ6ZMV5 832 aa20.42■□□□□ 0.86
LRCH3-211ENST00000466054 HOXD11P31277 338 aaPredicted RBP20.19■□□□□ 0.82
LRCH3-211ENST00000466054 CNKSR2Q8WXI2 1034 aa20.13■□□□□ 0.81
LRCH3-211ENST00000466054 RNF216Q9NWF9 866 aaPredicted RBP20.02■□□□□ 0.8
LRCH3-211ENST00000466054 RNF39Q9H2S5 420 aa19.99■□□□□ 0.79
LRCH3-211ENST00000466054 C1QBPQ07021 282 aaKnown RBP19.75■□□□□ 0.75
LRCH3-211ENST00000466054 NCBP3Q53F19 620 aaKnown RBP19.66■□□□□ 0.74
LRCH3-211ENST00000466054 DNAJC5BQ9UF47 199 aa19.55■□□□□ 0.72
LRCH3-211ENST00000466054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.43■□□□□ 0.71e-10■■■□□ 16
LRCH3-211ENST00000466054 NPM3O75607 178 aaKnown RBP19.22■□□□□ 0.67
LRCH3-211ENST00000466054 U3KPZ7 1027 aaPredicted RBP18.82■□□□□ 0.6
LRCH3-211ENST00000466054 CAPN15O75808 1086 aa18.8■□□□□ 0.6
LRCH3-211ENST00000466054 SPINK5Q9NQ38 1064 aaPredicted RBP18.67■□□□□ 0.58
LRCH3-211ENST00000466054 DSG3P32926 999 aa18.61■□□□□ 0.57
LRCH3-211ENST00000466054 KCNA4P22459 653 aa18.56■□□□□ 0.56
LRCH3-211ENST00000466054 APLP2Q06481 763 aa18.48■□□□□ 0.55
LRCH3-211ENST00000466054 TRHP20396 242 aaPredicted RBP18.4■□□□□ 0.54
LRCH3-211ENST00000466054 POTEHQ6S545 545 aa18.39■□□□□ 0.53
LRCH3-211ENST00000466054 SLC4A2P04920 1241 aa18.38■□□□□ 0.53
LRCH3-211ENST00000466054 ZNF219Q9P2Y4 722 aaPredicted RBP18.35■□□□□ 0.53
LRCH3-211ENST00000466054 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.34■□□□□ 0.53
LRCH3-211ENST00000466054 HNRNPUL2Q1KMD3 747 aaKnown RBP18.34■□□□□ 0.53
LRCH3-211ENST00000466054 ABCB7O75027 752 aa18.28■□□□□ 0.52
LRCH3-211ENST00000466054 SAMD1Q6SPF0 538 aaPredicted RBP18.19■□□□□ 0.5
LRCH3-211ENST00000466054 RBM42Q9BTD8 480 aaKnown RBP17.9■□□□□ 0.46
LRCH3-211ENST00000466054 MYCNP04198 464 aaPredicted RBP17.86■□□□□ 0.45
LRCH3-211ENST00000466054 POLA2Q14181 598 aa17.77■□□□□ 0.44
LRCH3-211ENST00000466054 CHRDL2Q6WN34 429 aa17.59■□□□□ 0.41
LRCH3-211ENST00000466054 SLC4A1APQ9BWU0 796 aaKnown RBP17.55■□□□□ 0.4
LRCH3-211ENST00000466054 FOXD4L1Q9NU39 408 aa17.49■□□□□ 0.39
LRCH3-211ENST00000466054 ZBTB12Q9Y330 459 aaPredicted RBP17.47■□□□□ 0.39
LRCH3-211ENST00000466054 AKT1S1Q96B36 256 aa17.36■□□□□ 0.37
LRCH3-211ENST00000466054 ATF5Q9Y2D1 282 aaPredicted RBP17.35■□□□□ 0.37
LRCH3-211ENST00000466054 OSCARQ8IYS5 282 aa17.22■□□□□ 0.35
LRCH3-211ENST00000466054 REM2Q8IYK8 340 aaPredicted RBP17.18■□□□□ 0.34
LRCH3-211ENST00000466054 SP7Q8TDD2 431 aaPredicted RBP17.08■□□□□ 0.32
LRCH3-211ENST00000466054 PIP4P2Q8N4L2 257 aa17.06■□□□□ 0.32
LRCH3-211ENST00000466054 PITPNM1O00562 1244 aa16.99■□□□□ 0.31
LRCH3-211ENST00000466054 ZBTB22O15209 634 aa16.98■□□□□ 0.31
LRCH3-211ENST00000466054 ATXN8OSP0DMR3 200 aa16.96■□□□□ 0.31
LRCH3-211ENST00000466054 HAX1O00165 279 aa16.95■□□□□ 0.3
LRCH3-211ENST00000466054 FBLN2P98095 1184 aa16.92■□□□□ 0.3
LRCH3-211ENST00000466054 FXR2P51116 673 aaKnown RBP eCLIP16.86■□□□□ 0.29
LRCH3-211ENST00000466054 SPDYE2BA6NHP3 402 aa16.83■□□□□ 0.28
LRCH3-211ENST00000466054 SPDYE6P0CI01 402 aa16.83■□□□□ 0.28
LRCH3-211ENST00000466054 SPDYE2Q495Y8 402 aa16.83■□□□□ 0.28
LRCH3-211ENST00000466054 CLEC11AQ9Y240 323 aa16.7■□□□□ 0.26
LRCH3-211ENST00000466054 SPDYE1Q8NFV5 336 aaPredicted RBP16.66■□□□□ 0.26
LRCH3-211ENST00000466054 ZNF692Q9BU19 519 aaPredicted RBP16.62■□□□□ 0.25
LRCH3-211ENST00000466054 PRKAR2AP13861 404 aaKnown RBP16.6■□□□□ 0.25
LRCH3-211ENST00000466054 MKRN4PQ13434 485 aaPredicted RBP16.53■□□□□ 0.24
LRCH3-211ENST00000466054 EVX2Q03828 476 aa16.51■□□□□ 0.23
LRCH3-211ENST00000466054 SSUH2Q9Y2M2 353 aa16.48■□□□□ 0.23
LRCH3-211ENST00000466054 PRR29P0C7W0 189 aa16.35■□□□□ 0.21
LRCH3-211ENST00000466054 C19orf67A6NJJ6 358 aa16.34■□□□□ 0.21
LRCH3-211ENST00000466054 PABPN1Q86U42 306 aaKnown RBP eCLIP16.34■□□□□ 0.21
LRCH3-211ENST00000466054 CHADLQ6NUI6 762 aa16.31■□□□□ 0.2
LRCH3-211ENST00000466054 GABBR2O75899 941 aa16.22■□□□□ 0.19
LRCH3-211ENST00000466054 CD44P16070 742 aaKnown RBP16.07■□□□□ 0.16
LRCH3-211ENST00000466054 FARP1Q9Y4F1 1045 aaPredicted RBP16.04■□□□□ 0.16
LRCH3-211ENST00000466054 LHX8Q68G74 356 aa16.03■□□□□ 0.16
LRCH3-211ENST00000466054 CSRNP3Q8WYN3 585 aa15.94■□□□□ 0.14
LRCH3-211ENST00000466054 CLCN6P51797 869 aa15.91■□□□□ 0.14
LRCH3-211ENST00000466054 STAG3Q9UJ98 1225 aa15.87■□□□□ 0.13
LRCH3-211ENST00000466054 DCBLD2Q96PD2 775 aa15.85■□□□□ 0.13
LRCH3-211ENST00000466054 ZRANB1Q9UGI0 708 aa15.81■□□□□ 0.12
LRCH3-211ENST00000466054 POTEIP0CG38 1075 aa15.77■□□□□ 0.12
LRCH3-211ENST00000466054 SPDYE4A6NLX3 237 aa15.73■□□□□ 0.11
LRCH3-211ENST00000466054 ZNF579Q8NAF0 562 aaKnown RBP15.73■□□□□ 0.11
LRCH3-211ENST00000466054 CREBZFQ9NS37 354 aa15.73■□□□□ 0.11
LRCH3-211ENST00000466054 EHMT2Q96KQ7 1210 aa15.72■□□□□ 0.11
LRCH3-211ENST00000466054 PAK3O75914 559 aaPredicted RBP15.71■□□□□ 0.11
LRCH3-211ENST00000466054 NPM1P06748 294 aaKnown RBP eCLIP15.59■□□□□ 0.09
LRCH3-211ENST00000466054 GALR2O43603 387 aaPredicted RBP15.57■□□□□ 0.08
LRCH3-211ENST00000466054 PHF12Q96QT6 1004 aa15.5■□□□□ 0.07
LRCH3-211ENST00000466054 PLSCR2Q9NRY7 297 aa15.48■□□□□ 0.07
LRCH3-211ENST00000466054 MNX1P50219 401 aaPredicted RBP15.35■□□□□ 0.05
LRCH3-211ENST00000466054 OTUD5Q96G74 571 aa15.31■□□□□ 0.04
LRCH3-211ENST00000466054 MS4A3Q96HJ5 214 aa15.27■□□□□ 0.04
LRCH3-211ENST00000466054 TSPYL2Q9H2G4 693 aaPredicted RBP15.27■□□□□ 0.04
LRCH3-211ENST00000466054 POTEB2H3BUK9 544 aa15.25■□□□□ 0.03
LRCH3-211ENST00000466054 PLEKHG5O94827 1062 aa15.24■□□□□ 0.03
LRCH3-211ENST00000466054 METRNQ9UJH8 293 aa15.24■□□□□ 0.03
LRCH3-211ENST00000466054 PELP1Q8IZL8 1130 aaKnown RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms