RNA–Protein interactions for RNA: ENST00000428136.1

LRCH3-204, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 3,205 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-204ENST00000428136 NISCHQ9Y2I1 1504 aa16.44■□□□□ 0.22
LRCH3-204ENST00000428136 CCDC180Q9P1Z9 1646 aa14.05□□□□□ -0.16
LRCH3-204ENST00000428136 ZCCHC6Q5VYS8 1495 aaKnown RBP13.94□□□□□ -0.18
LRCH3-204ENST00000428136 SHROOM4Q9ULL8 1493 aa13.76□□□□□ -0.21
LRCH3-204ENST00000428136 DCAF1Q9Y4B6 1507 aa13.61□□□□□ -0.23
LRCH3-204ENST00000428136 SUPT5HO00267 1087 aaKnown RBP13.52□□□□□ -0.24
LRCH3-204ENST00000428136 CHIC1Q5VXU3 224 aa13.32□□□□□ -0.28
LRCH3-204ENST00000428136 DCAF8L2P0C7V8 631 aa13.27□□□□□ -0.28
LRCH3-204ENST00000428136 MYO15BQ96JP2 1530 aa13.27□□□□□ -0.28
LRCH3-204ENST00000428136 ABCC9O60706 1549 aa13.16□□□□□ -0.3
LRCH3-204ENST00000428136 RSF1Q96T23 1441 aaPredicted RBP12.99□□□□□ -0.33
LRCH3-204ENST00000428136 SCRIBQ14160 1630 aa12.98□□□□□ -0.33
LRCH3-204ENST00000428136 HRCP23327 699 aa12.97□□□□□ -0.33
LRCH3-204ENST00000428136 NACADO15069 1562 aa12.94□□□□□ -0.34
LRCH3-204ENST00000428136 RB1CC1Q8TDY2 1594 aa12.9□□□□□ -0.34
LRCH3-204ENST00000428136 PCGF6Q9BYE7 350 aa12.82□□□□□ -0.36
LRCH3-204ENST00000428136 LOC105371045A0A1W2PR82 267 aa12.82□□□□□ -0.36
LRCH3-204ENST00000428136 CECR2Q9BXF3 1484 aa12.73□□□□□ -0.37
LRCH3-204ENST00000428136 MROH2BQ7Z745 1585 aa12.73□□□□□ -0.37
LRCH3-204ENST00000428136 TRIM26Q12899 539 aaPredicted RBP12.69□□□□□ -0.38
LRCH3-204ENST00000428136 TRIM41Q8WV44 630 aa12.67□□□□□ -0.38
LRCH3-204ENST00000428136 BAZ1AQ9NRL2 1556 aaPredicted RBP12.66□□□□□ -0.38
LRCH3-204ENST00000428136 WIZO95785 1651 aa12.65□□□□□ -0.38
LRCH3-204ENST00000428136 EIF4G1Q04637 1599 aaKnown RBP12.63□□□□□ -0.39
LRCH3-204ENST00000428136 PPARGC1BQ86YN6 1023 aaKnown RBP12.55□□□□□ -0.4
LRCH3-204ENST00000428136 TOP2AP11388 1531 aaKnown RBP12.53□□□□□ -0.4
LRCH3-204ENST00000428136 SMARCA4P51532 1647 aa12.5□□□□□ -0.41
LRCH3-204ENST00000428136 UNC13AQ9UPW8 1703 aa12.5□□□□□ -0.41
LRCH3-204ENST00000428136 ZEB1P37275 1124 aaPredicted RBP12.48□□□□□ -0.41
LRCH3-204ENST00000428136 SMARCA2P51531 1590 aa12.44□□□□□ -0.42
LRCH3-204ENST00000428136 FAM9AQ8IZU1 332 aaPredicted RBP12.44□□□□□ -0.42
LRCH3-204ENST00000428136 CCDC88BA6NC98 1476 aa12.42□□□□□ -0.42
LRCH3-204ENST00000428136 PEG3Q9GZU2 1588 aa12.36□□□□□ -0.43
LRCH3-204ENST00000428136 BICRAQ9NZM4 1560 aa12.34□□□□□ -0.43
LRCH3-204ENST00000428136 ABCC8Q09428 1581 aa12.33□□□□□ -0.44
LRCH3-204ENST00000428136 WRNQ14191 1432 aaPredicted RBP eCLIP12.33□□□□□ -0.44
LRCH3-204ENST00000428136 EEA1Q15075 1411 aa12.31□□□□□ -0.44
LRCH3-204ENST00000428136 TNIKQ9UKE5 1360 aa12.26□□□□□ -0.45
LRCH3-204ENST00000428136 SOGA1O94964 1423 aa12.24□□□□□ -0.45
LRCH3-204ENST00000428136 EHMT2Q96KQ7 1210 aa12.22□□□□□ -0.45
LRCH3-204ENST00000428136 CEP162Q5TB80 1403 aa12.22□□□□□ -0.45
LRCH3-204ENST00000428136 CSRNP3Q8WYN3 585 aa12.18□□□□□ -0.46
LRCH3-204ENST00000428136 RUSC2Q8N2Y8 1516 aa12.17□□□□□ -0.46
LRCH3-204ENST00000428136 GOLGA3Q08378 1498 aa12.16□□□□□ -0.46
LRCH3-204ENST00000428136 ATAD2BQ9ULI0 1458 aa12.16□□□□□ -0.46
LRCH3-204ENST00000428136 KIF21BO75037 1637 aa12.14□□□□□ -0.47
LRCH3-204ENST00000428136 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
LRCH3-204ENST00000428136 PABPN1Q86U42 306 aaKnown RBP eCLIP12.12□□□□□ -0.47
LRCH3-204ENST00000428136 CEP164Q9UPV0 1460 aa12.09□□□□□ -0.47
LRCH3-204ENST00000428136 BAZ1BQ9UIG0 1483 aaKnown RBP12.08□□□□□ -0.47
LRCH3-204ENST00000428136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.06□□□□□ -0.48
LRCH3-204ENST00000428136 CCER1Q8TC90 406 aaPredicted RBP12.05□□□□□ -0.48
LRCH3-204ENST00000428136 TOP2BQ02880 1626 aa12.03□□□□□ -0.48
LRCH3-204ENST00000428136 UBTFP17480 764 aaKnown RBP12.02□□□□□ -0.49
LRCH3-204ENST00000428136 BIVM-ERCC5R4GMW8 1640 aa12.01□□□□□ -0.49
LRCH3-204ENST00000428136 HMGXB3Q12766 1538 aa11.98□□□□□ -0.49
LRCH3-204ENST00000428136 CLIP1P30622 1438 aa11.97□□□□□ -0.49
LRCH3-204ENST00000428136 VPS8Q8N3P4 1428 aa11.97□□□□□ -0.49
LRCH3-204ENST00000428136 NCAPD3P42695 1498 aa11.96□□□□□ -0.49
LRCH3-204ENST00000428136 RAPGEF2Q9Y4G8 1499 aa11.95□□□□□ -0.5
LRCH3-204ENST00000428136 ERICH3Q5RHP9 1530 aa11.95□□□□□ -0.5
LRCH3-204ENST00000428136 SCAF1Q9H7N4 1312 aaKnown RBP11.92□□□□□ -0.5
LRCH3-204ENST00000428136 PRXQ9BXM0 1461 aa11.92□□□□□ -0.5
LRCH3-204ENST00000428136 DIEXFQ68CQ4 756 aaKnown RBP11.87□□□□□ -0.51
LRCH3-204ENST00000428136 CUX1P39880 1505 aa11.86□□□□□ -0.51
LRCH3-204ENST00000428136 CFTRP13569 1480 aa11.86□□□□□ -0.51
LRCH3-204ENST00000428136 TTBK1Q5TCY1 1321 aaPredicted RBP11.86□□□□□ -0.51
LRCH3-204ENST00000428136 ACIN1Q9UKV3 1341 aaKnown RBP11.84□□□□□ -0.51
LRCH3-204ENST00000428136 ARAP1Q96P48 1450 aa11.83□□□□□ -0.52
LRCH3-204ENST00000428136 PRDM2Q13029 1718 aa11.83□□□□□ -0.52
LRCH3-204ENST00000428136 ZNF316A6NFI3 1004 aaPredicted RBP11.82□□□□□ -0.52
LRCH3-204ENST00000428136 PELP1Q8IZL8 1130 aaKnown RBP11.81□□□□□ -0.52
LRCH3-204ENST00000428136 KIF27Q86VH2 1401 aa11.8□□□□□ -0.52
LRCH3-204ENST00000428136 APLP2Q06481 763 aa11.77□□□□□ -0.52
LRCH3-204ENST00000428136 NEUROD1Q13562 356 aa11.77□□□□□ -0.53
LRCH3-204ENST00000428136 CLSPNQ9HAW4 1339 aa11.77□□□□□ -0.53
LRCH3-204ENST00000428136 HNRNPUL2Q1KMD3 747 aaKnown RBP11.75□□□□□ -0.53
LRCH3-204ENST00000428136 RRBP1Q9P2E9 1410 aaKnown RBP11.74□□□□□ -0.53
LRCH3-204ENST00000428136 CENPBP07199 599 aaPredicted RBP11.74□□□□□ -0.53
LRCH3-204ENST00000428136 CUX2O14529 1486 aa11.74□□□□□ -0.53
LRCH3-204ENST00000428136 ARHGAP35Q9NRY4 1499 aa11.71□□□□□ -0.53
LRCH3-204ENST00000428136 MAP3K1Q13233 1512 aa11.7□□□□□ -0.54
LRCH3-204ENST00000428136 DHX57Q6P158 1386 aaKnown RBP11.69□□□□□ -0.54
LRCH3-204ENST00000428136 IGF1RP08069 1367 aa11.68□□□□□ -0.54
LRCH3-204ENST00000428136 KANK4Q5T7N3 995 aaPredicted RBP11.67□□□□□ -0.54
LRCH3-204ENST00000428136 CADPSQ9ULU8 1353 aa11.67□□□□□ -0.54
LRCH3-204ENST00000428136 GTF3C3Q9Y5Q9 886 aa11.63□□□□□ -0.55
LRCH3-204ENST00000428136 RANGAP1P46060 587 aaPredicted RBP11.62□□□□□ -0.55
LRCH3-204ENST00000428136 CCNB3Q8WWL7 1395 aa11.62□□□□□ -0.55
LRCH3-204ENST00000428136 FGD5Q6ZNL6 1462 aa11.61□□□□□ -0.55
LRCH3-204ENST00000428136 TIAM1Q13009 1591 aa11.61□□□□□ -0.55
LRCH3-204ENST00000428136 MIER1Q8N108 512 aa11.61□□□□□ -0.55
LRCH3-204ENST00000428136 CARMIL1Q5VZK9 1371 aa11.59□□□□□ -0.55
LRCH3-204ENST00000428136 CFAP43Q8NDM7 1665 aa11.56□□□□□ -0.56
LRCH3-204ENST00000428136 CC2D2AQ9P2K1 1620 aa11.56□□□□□ -0.56
LRCH3-204ENST00000428136 LRRC9Q6ZRR7 1453 aa11.55□□□□□ -0.56
LRCH3-204ENST00000428136 DNMBPQ6XZF7 1577 aa11.55□□□□□ -0.56
LRCH3-204ENST00000428136 ABCA10Q8WWZ4 1543 aa11.55□□□□□ -0.56
LRCH3-204ENST00000428136 FANCD2Q9BXW9 1451 aa11.54□□□□□ -0.56
LRCH3-204ENST00000428136 FHAD1B1AJZ9 1412 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms